CX292219

Overview
NameCX292219
Unique NameCX292219
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX292219_ssr577 microsatellite CX292219_ssr577:577..588. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX292219 vs. ExPASy Swiss-Prot
Match: KEG_ARATH (E3 ubiquitin-protein ligase KEG OS=Arabidopsis thaliana GN=KEG PE=1 SV=2)

HSP 1 Score: 235.728 bits (600), Expect = 1.979e-61
Identity = 105/128 (82.03%), Postives = 119/128 (92.97%), Query Frame = 1
Query:   22 ELQIGDWVRVRASVTTPTYQWGEVSHSSIGVVHRMESGELWVAFCFTERLWLCKAWEMERVRPFKVGDKVRIKEGLVTPRWGWGMETHASKGQVVGVDANGKLRIKFQWREGRPWIGDPADIVLDECS 405
            EL+IGDWVRV+AS+TTPTYQWGEV+ SS GVVHRME G+L V+FCF +RLWLCKA E+ER+RPF++GD+V+IK+GLVTPRWGWGMETHASKG VVGVDANGKLRIKF WREGRPWIGDPADIVLDE S
Sbjct: 1497 ELKIGDWVRVKASITTPTYQWGEVNPSSTGVVHRMEDGDLCVSFCFLDRLWLCKAGELERIRPFRIGDRVKIKDGLVTPRWGWGMETHASKGHVVGVDANGKLRIKFLWREGRPWIGDPADIVLDETS 1624          

HSP 2 Score: 101.679 bits (252), Expect = 4.460e-21
Identity = 47/125 (37.60%), Postives = 78/125 (62.40%), Query Frame = 1
Query:   22 ELQIGDWVRVRASVTTPTYQWGEVSHSSIGVVHRM-ESGELWVAFCFTERLWLCKAWEMERVRPFKVGDKVRIKEGLVTPRWGWGMETHASKGQVVGVDANGKLRIKFQWREGRPWIGDPADIVL 393
            + ++GDWVRV+ASV++P Y W +++ +SIGV+H + E G++ +AFCF  + + C   ++E+V PF VG ++ +   +  PR GW  ET A+ G+V+ +D +G L  +   R+   W   P D  L
Sbjct: 1115 DFKVGDWVRVKASVSSPKYGWEDITRNSIGVMHSLDEDGDVGIAFCFRSKPFSCSVTDVEKVTPFHVGQEIHMTPSITQPRLGWSNETPATIGKVMRIDMDGTLSAQVTGRQ-TLWRVSPGDAEL 1238          

HSP 3 Score: 92.4337 bits (228), Expect = 2.706e-18
Identity = 47/125 (37.60%), Postives = 72/125 (57.60%), Query Frame = 1
Query:   28 QIGDWVRVRASV-TTPTYQWGEVSHSSIGVVHRM-ESGELWVAFCFTERLWLCKAWEMERVRPFKVGDKVRIKEGLVTPRWGWGMETHASKGQVVGVDANGKLRIKFQWREGRPWIGDPADIVLD 396
            ++GDWVR + S+   P+Y W  V   SI VVH + E+G L +A CF +  W     ++E++   KVG  V  ++G+  PRWGW      S+G +  V A+G++R+ F    G  W GDPAD+ ++
Sbjct: 1243 EVGDWVRSKPSLGNRPSYDWSNVGRESIAVVHSIQETGYLELACCFRKGRWSTHYTDLEKIPALKVGQFVHFQKGITEPRWGWRAAKPDSRGIITTVHADGEVRVAFFGLPGL-WRGDPADLEVE 1366          

HSP 4 Score: 90.1225 bits (222), Expect = 1.343e-17
Identity = 44/123 (35.77%), Postives = 73/123 (59.35%), Query Frame = 1
Query:   22 ELQIGDWVRVRASVTTPTYQWGEVSHSSIGVVHRME-SGELWVAFCFTERLWLCKAWEMERVRPFKVGDKVRIKEGLVTPRWGWGMETHASKGQVVGVDANGKLRIKFQWREGRPWIGDPADI 387
            E ++GDWVR+R ++T+  + +G V   S+G+V+ +     L V   +    W C+  E+E V PF++GD+V +K  +  PR+ WG ETH S G++  ++ +G L I+   R   PW  DP+D+
Sbjct:  989 EFKVGDWVRIRQNLTSAKHGFGSVVPGSMGIVYCVRPDSSLLVELSYLPNPWHCEPEEVEPVAPFRIGDRVCVKRSVAEPRYAWGGETHHSVGKISEIENDGLLIIEIPNRP-IPWQADPSDM 1110          

HSP 5 Score: 80.1073 bits (196), Expect = 1.390e-14
Identity = 44/137 (32.12%), Postives = 71/137 (51.82%), Query Frame = 1
Query:   28 QIGDWVRVRASVTTPTYQWGEVSHSSIGVVHRME-SGELW-----VAFCFTERLWLCKAWEMERVRPFKVGDKVRIKEGLVTPRWGWGMETHASKGQVVGVDANGKLRIKFQWREGRPWIGDPADIVLDECSSCRTG 420
            ++G+WVR+R  V+     W  V   S+GVVH +   G+ W     V+FC  +  W      +E+ +   VG K R+K  +  PR+GW   +H S G +  +DA+GKLRI +     + W+ DP+++   E    + G
Sbjct: 1370 EVGEWVRLREGVSC----WKSVGPGSVGVVHGVGYEGDEWDGTTSVSFCGEQERWAGPTSHLEKAKKLVVGQKTRVKLAVKQPRFGWSGHSHGSVGTISAIDADGKLRI-YTPAGSKTWMLDPSEVETIEEEELKIG 1501          

HSP 6 Score: 72.0182 bits (175), Expect = 3.785e-12
Identity = 40/121 (33.06%), Postives = 65/121 (53.72%), Query Frame = 1
Query:   28 QIGDWVRVRASVTTPTYQWGEVSHSSIGVVHR-MESGELWVAFCFTERLWLCKAWEMERVRPFKVGDKVRIKEGLVTPRWGWGMETHASKGQVVGVDANGKLRIKFQWREGRPWIGDPADI 387
            ++GDWV+ +  +TTP + W      S+G V   +E  ++ +AFC  E   L    E+ ++ P   G  VR++  +  PR+GW  ++  S G V+ VD +G LR+ F     R W  DPA++
Sbjct:  867 EVGDWVKFKRGITTPLHGWQGAKPKSVGFVQTILEKEDMIIAFCSGEARVLAN--EVVKLIPLDRGQHVRLRADVKEPRFGWRGQSRDSVGTVLCVDEDGILRVGFP-GASRGWKADPAEM 984          

HSP 7 Score: 69.3218 bits (168), Expect = 2.453e-11
Identity = 38/109 (34.86%), Postives = 60/109 (55.05%), Query Frame = 1
Query:   28 QIGDWVRVRASVTTPTYQWGEVSHSSIGVVHRMESGELWVAFCFTERL-WLCKAWEMERVRPFKVGDKVRIKEGLVTPRWGWGMETHASKGQVVGVDANGKLRIKFQWR 351
            +IGD V V+ SV  P Y WG  +H S+G +  +E+  L +       + W     +ME++  FKVGD VR+K  + +P++GW   T  S G +  +D +G + I F +R
Sbjct: 1054 RIGDRVCVKRSVAEPRYAWGGETHHSVGKISEIENDGLLIIEIPNRPIPWQADPSDMEKIDDFKVGDWVRVKASVSSPKYGWEDITRNSIGVMHSLDEDGDVGIAFCFR 1162          
The following BLAST results are available for this feature:
BLAST of CX292219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
KEG_ARATH1.979e-6182.03E3 ubiquitin-protein ligase KEG OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionC04011H05SK FlavFr1 Citrus clementina cDNA clone C04011H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292219 ID=CX292219; Name=CX292219; organism=Citrus clementina; type=EST; length=743bp
CTGCGGAATTCGGCACGAGGGGAACTCCAGATTGGAGACTGGGTTAGAGT
TAGAGCATCAGTTACGACTCCAACTTATCAGTGGGGAGAGGTAAGCCATT
CAAGCATTGGAGTGGTACATAGGATGGAAAGTGGGGAATTATGGGTGGCA
TTCTGCTTTACGGAGAGGCTCTGGCTTTGCAAGGCATGGGAAATGGAAAG
GGTTAGACCTTTCAAAGTGGGGGACAAAGTGAGGATAAAAGAAGGGTTGG
TGACTCCTCGATGGGGATGGGGAATGGAGACTCATGCAAGCAAAGGGCAA
GTGGTTGGTGTAGATGCAAACGGGAAGTTAAGAATTAAATTTCAATGGAG
AGAAGGGAGACCATGGATTGGAGATCCCGCTGATATTGTGCTTGACGAGT
GCTCATCTTGCAGAACAGGCACTTCGTGAATTGTGATTGCTATCAAATTT
TCTTGCAGTTTGTTATAGAAGCTTCTTCTCCCAACAGATGTGGGGCTGTG
AATTCCACTGCATCACGCAGTTAGATTTGGAGTTTGCTCTCCAAACAATA
TGCGAAGTTATCGTGGGGATGATCGAATTTATTTATTTCAATAAAATGGA
AATACAGATAGATGGAAACTGAGCACATGATGGAGAAATTGGCTTGCCTT
ACTGTTAATTATAGGAAATACGAAAGCAGCCAGGTAAAAAAAGTAGCTGT
AGGCCATTTGTATCTCATAGATGATGGTTGTAGGTTGTAAGTT
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