CX294045

Overview
NameCX294045
Unique NameCX294045
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length523
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10268 contig Ccv1_Contig10268:488..1010. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C76_ARATH (Probable protein phosphatase 2C 76 OS=Arabidopsis thaliana GN=At5g53140 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 6.446e-37
Identity = 79/102 (77.45%), Postives = 88/102 (86.27%), Query Frame = 2
Query:   11 GVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRFHHVNEYPAEPEVE 316
            GVLAMSRAFGNRMLKQFVVAEPEI DLE+    ELLVLASDGLWDVVPNEDAVALA++ EEPE AARKLT+TAF+RGSADNITCIVV+F H  +    P++E
Sbjct:  259 GVLAMSRAFGNRMLKQFVVAEPEIQDLEIDHEAELLVLASDGLWDVVPNEDAVALAQSEEEPEAAARKLTDTAFSRGSADNITCIVVKFRH--DKTESPKIE 358          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C52_ORYSJ (Probable protein phosphatase 2C 52 OS=Oryza sativa subsp. japonica GN=Os05g0587100 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 8.712e-34
Identity = 69/91 (75.82%), Postives = 79/91 (86.81%), Query Frame = 2
Query:   11 GVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRFHH 283
            GVLAMSRAFGNR+LKQFVVA+PEI + E+ +  E L+LASDGLWDVVPNEDAV+L +  EEPE AARKLTETAF+RGS DNITCIVV+F H
Sbjct:  387 GVLAMSRAFGNRLLKQFVVADPEIQEQEIDDELEFLILASDGLWDVVPNEDAVSLVKIEEEPEAAARKLTETAFSRGSGDNITCIVVKFQH 477          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C13_ORYSJ (Probable protein phosphatase 2C 13 OS=Oryza sativa subsp. japonica GN=Os02g0255100 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.099e-31
Identity = 68/91 (74.73%), Postives = 77/91 (84.62%), Query Frame = 2
Query:   11 GVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRFHH 283
            GVLAMSRAFGNR+LK FVVAEPEI +  V E  E LVLASDGLWDVV NE+AV+LA+T + PE  ARKLTE A++RGSADNITCIVV+FHH
Sbjct:  269 GVLAMSRAFGNRLLKPFVVAEPEIQEELVNEDLECLVLASDGLWDVVENEEAVSLAKTEDLPESVARKLTEIAYSRGSADNITCIVVQFHH 359          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C07_ORYSJ (Probable protein phosphatase 2C 7 OS=Oryza sativa subsp. japonica GN=Os01g0618200 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 3.788e-29
Identity = 63/91 (69.23%), Postives = 71/91 (78.02%), Query Frame = 2
Query:   11 GVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRFHH 283
            GVLAMSRAFGNR LK+FVVAEPE+ + E+ +  E L+LASDGLWDVV NE AVA  +  E PE AARKL E AF RGS DNITCIVV+F H
Sbjct:  273 GVLAMSRAFGNRFLKRFVVAEPEVQEQEIDDDLEFLILASDGLWDVVSNEHAVAFVKAEEGPEAAARKLAEIAFARGSTDNITCIVVKFLH 363          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C59_ARATH (Probable protein phosphatase 2C 59 OS=Arabidopsis thaliana GN=WIN2 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.318e-25
Identity = 55/89 (61.80%), Postives = 71/89 (79.78%), Query Frame = 2
Query:   11 GVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRF 277
            GVLA+SRAFG+R+LKQ+VVA+PEI + +V    E L+LASDGLWDVV NE+AV + +  E+PE  A++L   A+ RGSADNITC+VVRF
Sbjct:  191 GVLAVSRAFGDRLLKQYVVADPEIQEEKVDSSLEFLILASDGLWDVVSNEEAVGMIKAIEDPEEGAKRLMMEAYQRGSADNITCVVVRF 279          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C71_ARATH (Probable protein phosphatase 2C 71 OS=Arabidopsis thaliana GN=At5g24940 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.660e-25
Identity = 54/89 (60.67%), Postives = 71/89 (79.78%), Query Frame = 2
Query:   11 GVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRF 277
            GVLA+SRAFG+R+LKQ+VVA+PEI + ++ +  E L+LASDGLWDV  NE+AVA+ +  E+PE + +KL   A  RGSADNITC+VVRF
Sbjct:  191 GVLAVSRAFGDRLLKQYVVADPEIQEEKIDDSLEFLILASDGLWDVFSNEEAVAVVKEVEDPEESTKKLVGEAIKRGSADNITCVVVRF 279          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C69_ARATH (Probable protein phosphatase 2C 69 OS=Arabidopsis thaliana GN=At5g10740 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 7.392e-25
Identity = 55/89 (61.80%), Postives = 71/89 (79.78%), Query Frame = 2
Query:   11 GVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRF 277
            GVLA+SRAFG+R+LKQ+VVA+PEI + ++ +  E L+LASDGLWDV  NE AVA+ +  E+PE +A+KL   A  RGSADNITC+VVRF
Sbjct:  191 GVLAVSRAFGDRLLKQYVVADPEIQEEKIDDTLEFLILASDGLWDVFSNEAAVAMVKEVEDPEDSAKKLVGEAIKRGSADNITCVVVRF 279          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C55_ORYSJ (Probable protein phosphatase 2C 55 OS=Oryza sativa subsp. japonica GN=Os06g0526700 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 7.392e-25
Identity = 54/91 (59.34%), Postives = 72/91 (79.12%), Query Frame = 2
Query:   11 GVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRFHH 283
            G+LA+SRAFGNR++K++V AEP I +  V EG E LVLA+DGLWDV+ NEDAV+L +  + P+ AA KLTE A +R + DN+TCIV++FHH
Sbjct:  281 GILAVSRAFGNRLMKRYVKAEPNIQEKVVDEGLEYLVLATDGLWDVMRNEDAVSLLKAQDGPKAAAMKLTEVARSRLTLDNVTCIVLQFHH 371          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C56_ORYSJ (Probable protein phosphatase 2C 56 OS=Oryza sativa subsp. japonica GN=Os06g0526800/Os06g0526950 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.261e-24
Identity = 55/91 (60.44%), Postives = 70/91 (76.92%), Query Frame = 2
Query:   11 GVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRFHH 283
            G+LAMSRAFGNR LK +V AEP+I +  V E  E L+LA+DGLWDV+ NEDAV+L +  + P+ AA KLTE A +R + DNITCIV++FHH
Sbjct:  255 GLLAMSRAFGNRALKHYVKAEPDIQEKVVDESLEYLILATDGLWDVMRNEDAVSLLKAQDGPKAAAMKLTEVAHSRLTLDNITCIVLQFHH 345          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C59_ORYSJ (Probable protein phosphatase 2C 59 OS=Oryza sativa subsp. japonica GN=Os06g0698300 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.151e-24
Identity = 59/104 (56.73%), Postives = 75/104 (72.12%), Query Frame = 2
Query:   11 GVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRF-HHVNEYPAEPEVEQ 319
            GVLA+SRAFG+++LKQ+VVA+PEI +  V    E L+LASDGLWDVV NE+AVA+ +   + E AA+KL + A  RGSADNITC+VVRF    N  P  P  +Q
Sbjct:  222 GVLAVSRAFGDKLLKQYVVADPEIKEEVVDSSLEFLILASDGLWDVVTNEEAVAMVKPILDSEQAAKKLLQEASQRGSADNITCLVVRFLEQENHLPERPTNDQ 325          
The following BLAST results are available for this feature:
BLAST of CX294045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
P2C76_ARATH6.446e-3777.45Probable protein phosphatase 2C 76 OS=Arabidopsis ... [more]
P2C52_ORYSJ8.712e-3475.82Probable protein phosphatase 2C 52 OS=Oryza sativa... [more]
P2C13_ORYSJ3.099e-3174.73Probable protein phosphatase 2C 13 OS=Oryza sativa... [more]
P2C07_ORYSJ3.788e-2969.23Probable protein phosphatase 2C 7 OS=Oryza sativa ... [more]
P2C59_ARATH3.318e-2561.80Probable protein phosphatase 2C 59 OS=Arabidopsis ... [more]
P2C71_ARATH5.660e-2560.67Probable protein phosphatase 2C 71 OS=Arabidopsis ... [more]
P2C69_ARATH7.392e-2561.80Probable protein phosphatase 2C 69 OS=Arabidopsis ... [more]
P2C55_ORYSJ7.392e-2559.34Probable protein phosphatase 2C 55 OS=Oryza sativa... [more]
P2C56_ORYSJ1.261e-2460.44Probable protein phosphatase 2C 56 OS=Oryza sativa... [more]
P2C59_ORYSJ2.151e-2456.73Probable protein phosphatase 2C 59 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionC05005C08SK FlavRip1 Citrus clementina cDNA clone C05005C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294045 ID=CX294045; Name=CX294045; organism=Citrus clementina; type=EST; length=523bp
CTCGTGCCGAGGTGTGCTAGCTATGTCTCGTGCTTTTGGTAACCGCATGC
TGAAGCAATTTGTCGTTGCGGAACCTGAGATCCATGACCTTGAAGTATAT
GAAGGATTTGAGCTGCTTGTGCTTGCAAGTGATGGACTATGGGATGTAGT
ACCCAATGAGGATGCTGTTGCACTTGCCCGAACAGGGGAAGAACCTGAAA
TCGCAGCTCGGAAGTTAACGGAGACTGCTTTTACCCGAGGCAGTGCTGAC
AACATAACGTGCATTGTAGTGAGATTCCACCACGTCAATGAATATCCAGC
CGAACCTGAAGTGGAGCAGGAGTAGGAATCTTCATTTATGTTGCATGGTG
TAGGTTTATCGACCCTTTAGGCTGTAGATCATCTGGAAATCTGCACATGC
ATGGCTGAATGTGCATAGCACCAGGGAGGAAGGCGATTTTTTTATTCATT
GTTTCTTTTTTTTCCCCGCACCCCCCTAATTTGAACCTTTCTGTATTGAC
TGCATATATTGAGTCTTGGTTCA
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