CX294601
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX294601 vs. ExPASy Swiss-Prot
Match: PSD12_PONAB (26S proteasome non-ATPase regulatory subunit 12 OS=Pongo abelii GN=PSMD12 PE=2 SV=3) HSP 1 Score: 175.252 bits (443), Expect = 1.157e-43 Identity = 85/192 (44.27%), Postives = 130/192 (67.71%), Query Frame = 1 Query: 1 SKMEGKGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKERK 576 +K+ +G L+ ++ LL+ EKQ R + D+ T + + ++++C+EAK+W LNE I+ LSK+R QLK Y+++ DL ++ LI TL V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M K E++ FILEQ+RLCL +DY+R QI+S+KI+ + F + +++ K Sbjct: 32 AKLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLK 223 HSP 2 Score: 21.1718 bits (43), Expect = 1.157e-43 Identity = 8/16 (50.00%), Postives = 9/16 (56.25%), Query Frame = 2 Query: 650 YYELMIRYYSHNNDYL 697 YY LMI+ H YL Sbjct: 226 YYNLMIQLDQHEGSYL 241
BLAST of CX294601 vs. ExPASy Swiss-Prot
Match: PSD12_HUMAN (26S proteasome non-ATPase regulatory subunit 12 OS=Homo sapiens GN=PSMD12 PE=1 SV=3) HSP 1 Score: 175.252 bits (443), Expect = 1.157e-43 Identity = 85/192 (44.27%), Postives = 130/192 (67.71%), Query Frame = 1 Query: 1 SKMEGKGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKERK 576 +K+ +G L+ ++ LL+ EKQ R + D+ T + + ++++C+EAK+W LNE I+ LSK+R QLK Y+++ DL ++ LI TL V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M K E++ FILEQ+RLCL +DY+R QI+S+KI+ + F + +++ K Sbjct: 32 AKLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLK 223 HSP 2 Score: 21.1718 bits (43), Expect = 1.157e-43 Identity = 8/16 (50.00%), Postives = 9/16 (56.25%), Query Frame = 2 Query: 650 YYELMIRYYSHNNDYL 697 YY LMI+ H YL Sbjct: 226 YYNLMIQLDQHEGSYL 241
BLAST of CX294601 vs. ExPASy Swiss-Prot
Match: PSD12_BOVIN (26S proteasome non-ATPase regulatory subunit 12 OS=Bos taurus GN=PSMD12 PE=2 SV=3) HSP 1 Score: 175.252 bits (443), Expect = 1.157e-43 Identity = 86/191 (45.03%), Postives = 129/191 (67.54%), Query Frame = 1 Query: 4 KMEGKGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKERK 576 K+ +G L+ ++ LL+ EKQ R + D+ T + + I+++C+EAK+W LNE I+ LSK+R QLK Y+++ DL ++ LI TL V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M K E++ FILEQ+RLCL +DY+R QI+S+KI+ + F + +++ K Sbjct: 33 KLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAIVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLK 223 HSP 2 Score: 21.1718 bits (43), Expect = 1.157e-43 Identity = 8/16 (50.00%), Postives = 9/16 (56.25%), Query Frame = 2 Query: 650 YYELMIRYYSHNNDYL 697 YY LMI+ H YL Sbjct: 226 YYNLMIQLDQHEGSYL 241
BLAST of CX294601 vs. ExPASy Swiss-Prot
Match: PSD12_MOUSE (26S proteasome non-ATPase regulatory subunit 12 OS=Mus musculus GN=Psmd12 PE=2 SV=3) HSP 1 Score: 169.474 bits (428), Expect = 6.134e-42 Identity = 83/191 (43.46%), Postives = 126/191 (65.97%), Query Frame = 1 Query: 4 KMEGKGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKERK 576 K+ +G L+ ++ LL+ EKQ R + D+ T + + ++++C+EAK+W NE I+ LSK+R QLK Y+++ DL ++ LI TL V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M K E++ FILEQ+RLCL +DY+R QI+S+KI+ + + ++ K Sbjct: 33 KLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLHNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPVKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFSQEENTENMK 223 HSP 2 Score: 21.1718 bits (43), Expect = 6.134e-42 Identity = 8/16 (50.00%), Postives = 9/16 (56.25%), Query Frame = 2 Query: 650 YYELMIRYYSHNNDYL 697 YY LMI+ H YL Sbjct: 226 YYNLMIQLDQHEGSYL 241
BLAST of CX294601 vs. ExPASy Swiss-Prot
Match: PSD12_DICDI (26S proteasome non-ATPase regulatory subunit 12 OS=Dictyostelium discoideum GN=psmD12 PE=2 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 5.098e-41 Identity = 80/186 (43.01%), Postives = 123/186 (66.13%), Query Frame = 1 Query: 19 GNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKERK 576 G L ++ LL TEKQ R + D T K EI++LC+EA +NE++V LSK+RGQL+ Y+DQ D+ ++ELI TL ++S GKI+VE ERARL K L+KIKE++G IA AA ++Q++ VET+G M K EKI F ++Q+R+C++ +D++RAQ++ K++ + D +++ K Sbjct: 39 GKLIEAIENLLITEKQCRQAEDSPSTSKIAAEIIKLCYEAGRLDLVNEKLVLLSKRRGQLRPAIKAIVQESMVYVDQITDMKQKLELIDTLRTISDGKIFVENERARLTKTLSKIKEDEGDIASAAKILQDLQVETYGTMEKREKITFFIDQMRICMNNKDFIRAQLIGNKVNRKTLAEDENQDLK 224 HSP 2 Score: 25.409 bits (54), Expect = 5.098e-41 Identity = 8/16 (50.00%), Postives = 14/16 (87.50%), Query Frame = 2 Query: 650 YYELMIRYYSHNNDYL 697 Y++ MIRY+SH+ +Y+ Sbjct: 227 YFKQMIRYFSHSANYI 242
BLAST of CX294601 vs. ExPASy Swiss-Prot
Match: RPN5_YEAST (26S proteasome regulatory subunit RPN5 OS=Saccharomyces cerevisiae GN=RPN5 PE=1 SV=3) HSP 1 Score: 141.739 bits (356), Expect = 1.936e-33 Identity = 77/180 (42.78%), Postives = 115/180 (63.89%), Query Frame = 1 Query: 16 KGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTP--DLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVF 549 + + + +DQLL EK+ R + D+A +K+ + +I+ L W LNEQ+ LSKK GQLK Y+ + DL+TRI +I+T+ V+ KI+VE+ERAR+ K L +IK+E+G I EAAD++ E+ VET+G+M +EKI FILEQ+ L + + DY +A +LSRKI + F Sbjct: 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTF 208 HSP 2 Score: 20.4014 bits (41), Expect = 1.936e-33 Identity = 6/16 (37.50%), Postives = 10/16 (62.50%), Query Frame = 2 Query: 650 YYELMIRYYSHNNDYL 697 YY L+++ H +YL Sbjct: 220 YYNLLVKISLHKREYL 235
BLAST of CX294601 vs. ExPASy Swiss-Prot
Match: RPN5_SCHPO (26S proteasome regulatory subunit rpn5 OS=Schizosaccharomyces pombe GN=rpn5a PE=1 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 3.524e-33 Identity = 78/185 (42.16%), Postives = 116/185 (62.70%), Query Frame = 1 Query: 22 NLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKERK 576 +++A +++LL EKQ+R + D + K + I L F A D++ LNEQ+V+L KK GQLK Y+ DL T+I LI+TL +++ GKIYVE+ERARL + L++IKEEQG I A +++ VET+G+ EK+AFIL+QVRL L R DY A ++KI+ + F+ + + K Sbjct: 27 DIDANLEKLLIFEKQVRQASDTSTNTKVLIYIADLLFRAGDFQGLNEQLVSLFKKHGQLKQSMTSLVQHVMTYLPGIDDLKTKINLIETLRTITDGKIYVEVERARLTQLLSQIKEEQGDIKSAQEILCNEPVETYGSFDLKEKVAFILDQVRLFLLRSDYYMASTYTKKINVKFFEKEDVQSLK 211 The following BLAST results are available for this feature:
BLAST of CX294601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX294601 ID=CX294601; Name=CX294601; organism=Citrus clementina; type=EST; length=701bpback to top |