CX294767

Overview
NameCX294767
Unique NameCX294767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length619
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294767_ssr289 microsatellite CX294767_ssr289:289..300. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL132_BRANA (60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.097e-36
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 2
Query:  317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457
            ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMK+R G+GFTLEELK +
Sbjct:   36 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAA 82          

HSP 2 Score: 83.5741 bits (205), Expect = 1.097e-36
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 3
Query:  102 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212
            MKHNNVIPNGHFKKHWQNYVKTWFNQPARK RRRV R
Sbjct:    1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVAR 37          
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL131_BRANA (60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.429e-36
Identity = 42/45 (93.33%), Postives = 44/45 (97.78%), Query Frame = 2
Query:  317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELK 451
            ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMK+R G+GFTLEELK
Sbjct:   36 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELK 80          

HSP 2 Score: 83.5741 bits (205), Expect = 1.429e-36
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 3
Query:  102 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212
            MKHNNVIPNGHFKKHWQNYVKTWFNQPARK RRRV R
Sbjct:    1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVAR 37          
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL131_ARATH (60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.158e-36
Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 2
Query:  317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457
            ARQKKAVKIFPRPT+GPLRPVVHGQTLKYNMK+R G+GFTLEELK +
Sbjct:   36 ARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAA 82          

HSP 2 Score: 83.1889 bits (204), Expect = 3.158e-36
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 3
Query:  102 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212
            MKHNNVIPNGHFKKHWQNYVKTWFNQPARK RRR+ R
Sbjct:    1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIAR 37          
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL133_ARATH (60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.185e-35
Identity = 43/47 (91.49%), Postives = 47/47 (100.00%), Query Frame = 2
Query:  317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457
            ARQKKAVKIFPRPT+GPLRPVVHGQTLKYNMK+RAG+GFTLEELKV+
Sbjct:   36 ARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRAGKGFTLEELKVA 82          

HSP 2 Score: 78.1814 bits (191), Expect = 1.185e-35
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 3
Query:  102 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212
            MKHNNVIP+ HF+KHWQNYVKTWFNQPARK RRRV R
Sbjct:    1 MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVAR 37          
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL132_ARATH (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.540e-31
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 2
Query:  317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457
            ARQ KAVKIFPRPTAGP+RPVVH QTL YNMK+RAG+GFTLEELK +
Sbjct:   36 ARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAA 82          

HSP 2 Score: 70.8626 bits (172), Expect = 3.540e-31
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 3
Query:  102 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212
            MKHNNVIPNGHFKK W+NYVKT FNQPA K RRR+ R
Sbjct:    1 MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIAR 37          
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_TOBAC (60S ribosomal protein L13 OS=Nicotiana tabacum GN=RPL13 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.859e-29
Identity = 39/47 (82.98%), Postives = 44/47 (93.62%), Query Frame = 2
Query:  317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457
            ARQKKAVKI PRPTAG LRP+VHGQTLKYNMK+R+GRGF+LEELK +
Sbjct:   32 ARQKKAVKISPRPTAGTLRPIVHGQTLKYNMKVRSGRGFSLEELKAA 78          

HSP 2 Score: 65.855 bits (159), Expect = 1.859e-29
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 3
Query:  126 NGHFKKHWQNYVKTWFNQPARKNRRRVGR 212
            NGHFKKHWQNYVKTWFNQPARK RRR+ R
Sbjct:    5 NGHFKKHWQNYVKTWFNQPARKTRRRIAR 33          
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_DICDI (60S ribosomal protein L13 OS=Dictyostelium discoideum GN=rpl13 PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.912e-21
Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 2
Query:  320 RQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457
            R +KA K+FPRP A  L+PVV G T++YNMK+RAGRGFTLEELK +
Sbjct:   38 RIEKAAKVFPRPIA-TLKPVVRGSTIRYNMKVRAGRGFTLEELKAA 82          

HSP 2 Score: 58.151 bits (139), Expect = 1.912e-21
Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = 3
Query:  108 HNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212
            HN V+ N HF+KHWQ  V+TWFNQPARK RRR  R
Sbjct:    4 HNKVLSNDHFRKHWQMRVRTWFNQPARKIRRRNNR 38          
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_SPOFR (60S ribosomal protein L13 OS=Spodoptera frugiperda GN=RpL13 PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 2.484e-21
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 3
Query:  105 KHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212
            K NN+IPNGHF K WQ +VKTWFNQPAR++RR+  R
Sbjct:    3 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNR 38          

HSP 2 Score: 59.6918 bits (143), Expect = 2.484e-21
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 2
Query:  320 RQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457
            R KKA  + PRP AGPLRPVV   T++Y+ K+RAGRGFTL E++ +
Sbjct:   38 RIKKAKAVAPRPAAGPLRPVVRCPTIRYHTKVRAGRGFTLREIRAA 83          
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_CHLSW (60S ribosomal protein L13 OS=Chlamydomonas sp. (strain W80) GN=RPL13 PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 3.237e-21
Identity = 30/45 (66.67%), Postives = 34/45 (75.56%), Query Frame = 2
Query:  317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELK 451
            AR +KA   FPRP AG L+P+V  QT+KYN K R GRGFTLEELK
Sbjct:   37 ARAEKAKATFPRPVAGSLKPIVRCQTVKYNTKQRLGRGFTLEELK 81          

HSP 2 Score: 59.3066 bits (142), Expect = 3.237e-21
Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 3
Query:  102 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212
            ++ N+++PNGHF K WQ +VKTWFNQPARK RRR  R
Sbjct:    2 VRGNDMLPNGHFHKKWQFHVKTWFNQPARKQRRRNAR 38          
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_DROME (60S ribosomal protein L13 OS=Drosophila melanogaster GN=RpL13 PE=1 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 7.114e-21
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 2
Query:  320 RQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELK 451
            R KKA  +FPRP +G LRPVV   T++Y+ KLRAGRGFTLEELK
Sbjct:   38 RVKKAKAVFPRPASGALRPVVRCPTIRYHTKLRAGRGFTLEELK 81          

HSP 2 Score: 57.3806 bits (137), Expect = 7.114e-21
Identity = 24/36 (66.67%), Postives = 27/36 (75.00%), Query Frame = 3
Query:  105 KHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212
            K NN+IPN H+ K WQ +VKTWFNQPARK RR   R
Sbjct:    3 KGNNMIPNQHYHKWWQRHVKTWFNQPARKVRRHANR 38          
The following BLAST results are available for this feature:
BLAST of CX294767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL132_BRANA1.097e-3689.3660S ribosomal protein L13-2 OS=Brassica napus PE=2... [more]
RL131_BRANA1.429e-3693.3360S ribosomal protein L13-1 OS=Brassica napus PE=2... [more]
RL131_ARATH3.158e-3687.2360S ribosomal protein L13-1 OS=Arabidopsis thalian... [more]
RL133_ARATH1.185e-3591.4960S ribosomal protein L13-3 OS=Arabidopsis thalian... [more]
RL132_ARATH3.540e-3182.98Putative 60S ribosomal protein L13-2 OS=Arabidopsi... [more]
RL13_TOBAC1.859e-2982.9860S ribosomal protein L13 OS=Nicotiana tabacum GN=... [more]
RL13_DICDI1.912e-2167.3960S ribosomal protein L13 OS=Dictyostelium discoid... [more]
RL13_SPOFR2.484e-2169.4460S ribosomal protein L13 OS=Spodoptera frugiperda... [more]
RL13_CHLSW3.237e-2166.6760S ribosomal protein L13 OS=Chlamydomonas sp. (st... [more]
RL13_DROME7.114e-2168.1860S ribosomal protein L13 OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionC05055F12SK FlavSen1 Citrus clementina cDNA clone C05055F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294767 ID=CX294767; Name=CX294767; organism=Citrus clementina; type=EST; length=619bp
TTAATTAAAATTACATGTAATTATATGCCCATCAATCTTAAATCTTTTAT
ATTTGATAGTTAGTTCTGAATCTGGTTGTGAATGTGATTGTGCTCACAGA
AATGAAGCACAACAATGTAATTCCAAATGGGCACTTTAAGAAGCATTGGC
AGAACTATGTCAAGACTTGGTTTAACCAACCGGCTCGCAAAAATCGACGA
CGAGTTGGTCGGTATTCTTTTCTTTAATTAGCTTTATTTCACTTCTTGTT
CCTGTTGATATCGTTTTCATTTTGTTGGTGCTTATTAGTTGTTTGTTTGT
TTAAAAATCACTAACAGCTCGTCAAAAGAAGGCCGTTAAAATCTTCCCTC
GCCCTACTGCTGGTCCTCTTCGCCCCGTCGTTCATGGCCAGACTTTGAAA
TATAACATGAAATTAAGGGCTGGCAGAGGCTTTACTCTTGAGGAACTCAA
GGTTTCTTTCTTCTTTTTCTTTTAGTTTCATTTTCGATAATTGATTTGAT
TAATATATTGCTTATGCATTCACATTATGTTAATTATGATTCAGTTGATG
TTTCTTTGTTATTATTGCTTTAGTTAATCTTATTCTCTTTACCCTAAGGC
TGCTGGAATTCCCAAGAAC
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