CX294851

Overview
NameCX294851
Unique NameCX294851
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length643
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294851 vs. ExPASy Swiss-Prot
Match: AMPD_ARATH (AMP deaminase OS=Arabidopsis thaliana GN=AMPD PE=1 SV=2)

HSP 1 Score: 245.743 bits (626), Expect = 1.479e-64
Identity = 116/157 (73.89%), Postives = 127/157 (80.89%), Query Frame = 2
Query:   59 LQLPRLYNVYKQMGIVKSFQNIIDNVFIPLFEVTIDPSSHPQLHVFLLMVVGFDLVDDESKPERRPTKHMPKPAEWTNEFNPXXXXXXXXXXXXXXXXXKLRESKGMPTIKLRPHCGEAGEIDHLAAAFLLCNNISHGINLRKSPVLQYLYYLAQVG 529
            +QLPRLYN+YK MGIV SFQNI+DN+FIPLFE T+DP SHPQLHVFL  VVGFDLVDDESKPERRPTKHMP PA+WTN FNP                 KLRESKGM TI LRPH GEAG+IDHLAA FL C++I+HGINLRKSPVLQYLYYLAQ+G
Sbjct:  545 IQLPRLYNIYKDMGIVTSFQNILDNIFIPLFEATVDPDSHPQLHVFLKQVVGFDLVDDESKPERRPTKHMPTPAQWTNAFNPAFSYYVYYCYANLYVLNKLRESKGMTTITLRPHSGEAGDIDHLAATFLTCHSIAHGINLRKSPVLQYLYYLAQIG 701          
BLAST of CX294851 vs. ExPASy Swiss-Prot
Match: AMPD_ORYSJ (Probable AMP deaminase OS=Oryza sativa subsp. japonica GN=AMPD PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.635e-63
Identity = 110/157 (70.06%), Postives = 129/157 (82.17%), Query Frame = 2
Query:   59 LQLPRLYNVYKQMGIVKSFQNIIDNVFIPLFEVTIDPSSHPQLHVFLLMVVGFDLVDDESKPERRPTKHMPKPAEWTNEFNPXXXXXXXXXXXXXXXXXKLRESKGMPTIKLRPHCGEAGEIDHLAAAFLLCNNISHGINLRKSPVLQYLYYLAQVG 529
            +Q+PR+YNVY++MG + SFQN++DN+F+PLFEVT+DP+SHPQLHVFL  VVG DLVDDESKPERRPTKHMP P +WTN FNP                 KLRESKGM TIKLRPHCGEAG+IDHLAAAFL  +NI+HG+NL+KSPVLQYLYYLAQ+G
Sbjct:  521 IQIPRIYNVYREMGTINSFQNLLDNIFLPLFEVTVDPASHPQLHVFLQQVVGLDLVDDESKPERRPTKHMPTPEQWTNVFNPAYAYYVYYCYANLYTLNKLRESKGMTTIKLRPHCGEAGDIDHLAAAFLTSHNIAHGVNLKKSPVLQYLYYLAQIG 677          
BLAST of CX294851 vs. ExPASy Swiss-Prot
Match: AMPD_DICDI (AMP deaminase OS=Dictyostelium discoideum GN=amdA PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.460e-44
Identity = 85/157 (54.14%), Postives = 110/157 (70.06%), Query Frame = 2
Query:   59 LQLPRLYNVYKQMGIVKSFQNIIDNVFIPLFEVTIDPSSHPQLHVFLLMVVGFDLVDDESKPERRPTKHMPKPAEWTNEFNPXXXXXXXXXXXXXXXXXKLRESKGMPTIKLRPHCGEAGEIDHLAAAFLLCNNISHGINLRKSPVLQYLYYLAQVG 529
            +Q+PRLY+VY++     +FQ+ ++NVF PLFEVT DPSSHP+LH+FL  VVG D VDDESK E++ T+  P P EW++E NP                 + RE KG+  + LRPH GEAGE+DH+ AAF L + I+HGINLRK+PVLQYLYYL Q+G
Sbjct:  375 IQVPRLYDVYRETSTT-TFQDFLNNVFHPLFEVTKDPSSHPKLHLFLQQVVGIDCVDDESKFEKKFTEKFPVPGEWSSEHNPPYTYYLYYLYANLYTLNQFREEKGLNILTLRPHSGEAGEVDHMGAAFYLAHGINHGINLRKTPVLQYLYYLTQIG 530          
BLAST of CX294851 vs. ExPASy Swiss-Prot
Match: AMPD_SCHPO (AMP deaminase OS=Schizosaccharomyces pombe GN=ada1 PE=1 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 5.469e-43
Identity = 84/156 (53.85%), Postives = 105/156 (67.31%), Query Frame = 2
Query:   59 LQLPRLYNVYKQMGIVKSFQNIIDNVFIPLFEVTIDPSSHPQLHVFLLMVVGFDLVDDESKPERRPTKHMPKPAEWTNEFNPXXXXXXXXXXXXXXXXXKLRESKGMPTIKLRPHCGEAGEIDHLAAAFLLCNNISHGINLRKSPVLQYLYYLAQV 526
            +Q+PRLY+VYK+ GIV++F+ ++ NVF PLFEVT DP +HP+LHVFL  V+GFD VDDESKPERR  +  P P  W    NP                   R+ +G  T  LRPHCGEAG+ DHLA+AFLL + I+HGI LRK P LQYL+YL Q+
Sbjct:  488 IQVPRLYDVYKKSGIVETFEEVVRNVFEPLFEVTKDPRTHPKLHVFLQRVIGFDSVDDESKPERRTFRKFPYPKHWDINLNPPYSYWLYYMYANMTSLNSWRKIRGFNTFVLRPHCGEAGDTDHLASAFLLSHGINHGILLRKVPFLQYLWYLDQI 643          
BLAST of CX294851 vs. ExPASy Swiss-Prot
Match: AMPD_YEAST (AMP deaminase OS=Saccharomyces cerevisiae GN=AMD1 PE=1 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 7.897e-42
Identity = 84/157 (53.50%), Postives = 107/157 (68.15%), Query Frame = 2
Query:   59 LQLPRLYNVYKQMGIVKSFQNIIDNVFIPLFEVTIDPSSHPQLHVFLLMVVGFDLVDDESKPERRPTKHMPKPAEWTNEFNPXXXXXXXXXXXXXXXXXKLRESKGMPTIKLRPHCGEAGEIDHLAAAFLLCNNISHGINLRKSPVLQYLYYLAQVG 529
            +Q+PRLY++YK+ GIV+SFQ+I  N+F PLFEVT +P SHP+LHVFL  V+GFD VDDESK +RR  +  PKP+ W    NP                 + R  +G  T+ LRPHCGEAG+ +HL +A+LL + ISHGI LRK P +QYLYYL QVG
Sbjct:  516 VQIPRLYDIYKKTGIVQSFQDICKNLFQPLFEVTKNPQSHPKLHVFLQRVIGFDSVDDESKVDRRFHRKYPKPSLWEAPQNPPYSYYLYYLYSNVASLNQWRAKRGFNTLVLRPHCGEAGDPEHLVSAYLLAHGISHGILLRKVPFVQYLYYLDQVG 672          
BLAST of CX294851 vs. ExPASy Swiss-Prot
Match: AMPD2_HUMAN (AMP deaminase 2 OS=Homo sapiens GN=AMPD2 PE=1 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 7.897e-42
Identity = 85/177 (48.02%), Postives = 111/177 (62.71%), Query Frame = 2
Query:    2 RLLRVNVVFLTHAFYFEFNLQLPRLYNVYKQMGIVKSFQNIIDNVFIPLFEVTIDPSSHPQLHVFLLMVVGFDLVDDESKPERRP-TKHMPKPAEWTNEFNPXXXXXXXXXXXXXXXXXKLRESKGMPTIKLRPHCGEAGEIDHLAAAFLLCNNISHGINLRKSPVLQYLYYLAQVG 529
            +L R  V+   H+    + +Q+PRL++VY+  G + +FQ +++N+F+PLFE T+ P+SHP+LH+FL  V GFD VDDESKPE        P P  W  E NP                  LR  +G  T  LRPHCGEAG I HL +AF+L  NISHG+ LRK+PVLQYLYYLAQ+G
Sbjct:  553 KLARWAVMHRVHSPNVRWLVQVPRLFDVYRTKGQLANFQEMLENIFLPLFEATVHPASHPELHLFLEHVDGFDSVDDESKPENHVFNLESPLPEAWVEEDNPPYAYYLYYTFANMAMLNHLRRQRGFHTFVLRPHCGEAGPIHHLVSAFMLAENISHGLLLRKAPVLQYLYYLAQIG 729          
BLAST of CX294851 vs. ExPASy Swiss-Prot
Match: AMPD2_RAT (AMP deaminase 2 OS=Rattus norvegicus GN=Ampd2 PE=2 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 2.298e-41
Identity = 85/177 (48.02%), Postives = 110/177 (62.15%), Query Frame = 2
Query:    2 RLLRVNVVFLTHAFYFEFNLQLPRLYNVYKQMGIVKSFQNIIDNVFIPLFEVTIDPSSHPQLHVFLLMVVGFDLVDDESKPERRP-TKHMPKPAEWTNEFNPXXXXXXXXXXXXXXXXXKLRESKGMPTIKLRPHCGEAGEIDHLAAAFLLCNNISHGINLRKSPVLQYLYYLAQVG 529
            +L R  V    H+    + +Q+PRL++VY+  G + +FQ +++N+F+PLFE T+ P+SHP+LH+FL  V GFD VDDESKPE        P P  W  E NP                  LR  +G  T  LRPHCGEAG I HL +AF+L  NISHG+ LRK+PVLQYLYYLAQ+G
Sbjct:  499 KLARWAVNHRVHSPNVRWLVQVPRLFDVYRTKGQLANFQEMLENIFLPLFEATVHPASHPELHLFLEHVDGFDSVDDESKPENHVFNLESPLPEAWVEEDNPPYAYYLYYTFANMAMLNHLRRQRGFHTFVLRPHCGEAGPIHHLVSAFMLAENISHGLLLRKAPVLQYLYYLAQIG 675          
BLAST of CX294851 vs. ExPASy Swiss-Prot
Match: AMPD2_MOUSE (AMP deaminase 2 OS=Mus musculus GN=Ampd2 PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.298e-41
Identity = 85/177 (48.02%), Postives = 110/177 (62.15%), Query Frame = 2
Query:    2 RLLRVNVVFLTHAFYFEFNLQLPRLYNVYKQMGIVKSFQNIIDNVFIPLFEVTIDPSSHPQLHVFLLMVVGFDLVDDESKPERRP-TKHMPKPAEWTNEFNPXXXXXXXXXXXXXXXXXKLRESKGMPTIKLRPHCGEAGEIDHLAAAFLLCNNISHGINLRKSPVLQYLYYLAQVG 529
            +L R  V    H+    + +Q+PRL++VY+  G + +FQ +++N+F+PLFE T+ P+SHP+LH+FL  V GFD VDDESKPE        P P  W  E NP                  LR  +G  T  LRPHCGEAG I HL +AF+L  NISHG+ LRK+PVLQYLYYLAQ+G
Sbjct:  473 KLARWAVNHKVHSPNVRWLVQVPRLFDVYRTKGQLANFQEMLENIFLPLFEATVHPASHPELHLFLEHVDGFDSVDDESKPENHVFNLESPLPEAWVEEDNPPYAYYLYYTFANMAMLNHLRRQRGFHTFVLRPHCGEAGPIHHLVSAFMLAENISHGLLLRKAPVLQYLYYLAQIG 649          
BLAST of CX294851 vs. ExPASy Swiss-Prot
Match: AMPD3_RAT (AMP deaminase 3 OS=Rattus norvegicus GN=Ampd3 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 9.036e-38
Identity = 76/171 (44.44%), Postives = 106/171 (61.99%), Query Frame = 2
Query:   26 FLTHAFY---FEFNLQLPRLYNVYKQMGIVKSFQNIIDNVFIPLFEVTIDPSSHPQLHVFLLMVVGFDLVDDESK-PERRPTKHMPKPAEWTNEFNPXXXXXXXXXXXXXXXXXKLRESKGMPTIKLRPHCGEAGEIDHLAAAFLLCNNISHGINLRKSPVLQYLYYLAQV 526
            F+ H  Y     + +Q+PR+Y++++   ++ SF  +++N+F+PLF+ TI+P  H +LH+FL  V GFD VDDESK  +   +   P P  WT+E NP                  LR  +G+ T   RPHCGEAG I HL +AFL  +NISHG+ L+KSPVLQYLYYLAQ+
Sbjct:  455 FIQHKVYSPNMRWIIQVPRIYDIFRSKKLLPSFGKMLENIFLPLFQATINPQDHRELHLFLKYVTGFDSVDDESKHSDHMFSDKSPSPDLWTSEQNPPYSYYLYYMYANIMVLNNLRRERGLSTFLFRPHCGEAGSITHLVSAFLTADNISHGLLLKKSPVLQYLYYLAQI 625          
BLAST of CX294851 vs. ExPASy Swiss-Prot
Match: AMPD1_RAT (AMP deaminase 1 OS=Rattus norvegicus GN=Ampd1 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.180e-37
Identity = 73/157 (46.50%), Postives = 101/157 (64.33%), Query Frame = 2
Query:   59 LQLPRLYNVYKQMGIVKSFQNIIDNVFIPLFEVTIDPSSHPQLHVFLLMVVGFDLVDDESKPERRP-TKHMPKPAEWTNEFNPXXXXXXXXXXXXXXXXXKLRESKGMPTIKLRPHCGEAGEIDHLAAAFLLCNNISHGINLRKSPVLQYLYYLAQV 526
            +Q+PR+Y+V++    +  F  +++N+F+P+FE TI+P +HP L VFL  + GFD VDDESK      +   PKP EWT E NP                  LR+ +GM T   RPHCGEAG + HL  AF++ +NISHG+NL+KSPVLQYL++LAQ+
Sbjct:  457 IQVPRIYDVFRSKNFLPHFGKMLENIFLPVFEATINPQTHPDLSVFLKHITGFDSVDDESKHSGHMFSSKSPKPEEWTMENNPSYTYYAYYMYANIMVLNCLRKERGMNTFLFRPHCGEAGALTHLMTAFMIADNISHGLNLKKSPVLQYLFFLAQI 613          
The following BLAST results are available for this feature:
BLAST of CX294851 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
AMPD_ARATH1.479e-6473.89AMP deaminase OS=Arabidopsis thaliana GN=AMPD PE=1... [more]
AMPD_ORYSJ1.635e-6370.06Probable AMP deaminase OS=Oryza sativa subsp. japo... [more]
AMPD_DICDI6.460e-4454.14AMP deaminase OS=Dictyostelium discoideum GN=amdA ... [more]
AMPD_SCHPO5.469e-4353.85AMP deaminase OS=Schizosaccharomyces pombe GN=ada1... [more]
AMPD_YEAST7.897e-4253.50AMP deaminase OS=Saccharomyces cerevisiae GN=AMD1 ... [more]
AMPD2_HUMAN7.897e-4248.02AMP deaminase 2 OS=Homo sapiens GN=AMPD2 PE=1 SV=2[more]
AMPD2_RAT2.298e-4148.02AMP deaminase 2 OS=Rattus norvegicus GN=Ampd2 PE=2... [more]
AMPD2_MOUSE2.298e-4148.02AMP deaminase 2 OS=Mus musculus GN=Ampd2 PE=1 SV=1[more]
AMPD3_RAT9.036e-3844.44AMP deaminase 3 OS=Rattus norvegicus GN=Ampd3 PE=2... [more]
AMPD1_RAT1.180e-3746.50AMP deaminase 1 OS=Rattus norvegicus GN=Ampd1 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC05056F12SK PhIFruit1 Citrus clementina cDNA clone C05056F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294851 ID=CX294851; Name=CX294851; organism=Citrus clementina; type=EST; length=643bp
GAGACTACTACGTGTTAATGTTGTGTTTCTAACACATGCCTTTTATTTCG
AATTCAATTTGCAGCTACCACGACTATACAATGTATACAAGCAAATGGGC
ATTGTTAAATCTTTTCAAAATATTATTGATAATGTGTTCATTCCCCTATT
TGAAGTCACGATTGATCCAAGCTCCCATCCTCAACTTCATGTGTTCCTGT
TGATGGTTGTGGGTTTTGACCTTGTAGATGATGAAAGTAAACCAGAAAGA
CGTCCAACAAAGCACATGCCCAAACCGGCTGAATGGACCAATGAGTTCAA
TCCGGCTTACTCGTATTATACTTATTACTTCTATGCAAACTTGTATACTC
TCAACAAGCTTCGTGAATCAAAGGGAATGCCAACAATTAAACTGCGGCCT
CATTGTGGGGAGGCTGGTGAAATTGACCATTTGGCTGCTGCATTCCTTTT
ATGTAATAACATATCACATGGTATTAATTTGCGGAAATCCCCAGTTTTGC
AGTACTTGTATTACCTCGCTCAGGTTGGCTACACTTGCATTGGCTTGTTC
CTTTTTGAGGATTTGGCTTTGGTTCTGTAGGCTATATAACTCCTAGTGTA
TCATTCATGACATTGGAATTAGGCATGTACATAGAAATTGCAT
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