CX294898
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_PARUW (Tyrosyl-tRNA synthetase OS=Protochlamydia amoebophila (strain UWE25) GN=tyrS PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 3.984e-26 Identity = 58/122 (47.54%), Postives = 82/122 (67.21%), Query Frame = 1 Query: 235 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIFG----SSNVVILN 588 NV+D L RG ++++TS+ +R L + + +KVYCGFDPTA+SLHLGNL+ I+ L+WF R GH VA++GGAT +GDPSGK+ ER LD ++ N+ GI K I ++ +ILN Sbjct: 3 NVMDVLRERGFIDAVTSEEIRQLTN---QPIKVYCGFDPTADSLHLGNLVAIMGLAWFQRFGHTPVAIVGGATGMIGDPSGKNAERQLLDEKKIQLNLKGISKNLEAILDFNHPTAPAIILN 121
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYYM_DICDI (Probable tyrosyl-tRNA synthetase, mitochondrial OS=Dictyostelium discoideum GN=mtyrS PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 2.955e-21 Identity = 52/141 (36.88%), Postives = 83/141 (58.87%), Query Frame = 1 Query: 211 TQTHGRHPNVVDTLERRGLLESITSDNLRSLA--------------SSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIFGSSNVVILNI 591 T T NV++ L++RG + +T+ ++ + ++N + +Y GFDPTA+SLH+GNLL ++V+ F R GH +AL+GGATA +GDPSGKS +R L + +E N+ IR+ + + G +V+ NI Sbjct: 30 TITKNDKNNVINILKKRGFIHQMTASDIEMIKMTSTNNNNNNDNNNNNNNNKVSLYAGFDPTADSLHIGNLLTLMVMLHFKRHGHNPIALMGGATALIGDPSGKSSDRVMLTEEFIEGNLKHIRENITAVLGEDTLVVNNI 170
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYYM_YEAST (Tyrosyl-tRNA synthetase, mitochondrial OS=Saccharomyces cerevisiae GN=MSY1 PE=1 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.466e-20 Identity = 54/140 (38.57%), Postives = 83/140 (59.29%), Query Frame = 1 Query: 148 IKNSAFFSSISCVQQLQSDPQTQTHGRHPNVVDTLERRGLLESITSDN--LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF 561 + S F+S S ++ Q + R N++D L++RGL+ ++ LR+ + N+K +K+YCG DPTA+SLHLGNL+ ++VL F GH V +IGGAT +VGDPSG+ ER ++ D + N+ I + F Sbjct: 31 LPKSRFYSQPSALEV-----QGTSDSRSDNILDELKQRGLVSQVSQPESFLRTKLNGNDK-IKLYCGVDPTAQSLHLGNLVPLMVLLHFYVKGHDIVTVIGGATGKVGDPSGRKTERDVMENDIRQSNVASISQQLQRFF 164
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_LACF3 (Tyrosyl-tRNA synthetase OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=tyrS PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 8.046e-19 Identity = 48/119 (40.34%), Postives = 71/119 (59.66%), Query Frame = 1 Query: 235 NVVDTLERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIFGSSNVVILN 588 N++D L+ RG L T + LR L + EK + +YCG DP+ +SLH+G+L+ ++L F GH+ V LIGG T +GDPSG+ ER LE+N+ + K +FG+ N I+N Sbjct: 2 NIIDELKWRGALNQATDEEGLREL--TEEKKIALYCGTDPSGDSLHIGHLIPFMMLKRFQLAGHKPVILIGGGTGAIGDPSGRKTERDLETRSKLEQNVQSLTKQMIRLFGTENFTIVN 118
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_RHOBA (Tyrosyl-tRNA synthetase OS=Rhodopirellula baltica GN=tyrS PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.051e-18 Identity = 47/102 (46.08%), Postives = 68/102 (66.67%), Query Frame = 1 Query: 235 NVVDTLERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGI 537 ++++ L RGLL T +N + L +S +T +Y GFDPTA SLH+G ++ +++L F R GH +AL+GGAT +GDPSGKS ER L D L+KN+ G+ Sbjct: 15 SLIEDLRWRGLLNQTTDENGIAELLNSGPQT--IYIGFDPTATSLHVGGMMQLMMLRRFQRAGHNPIALVGGATGMIGDPSGKSEERNLLSADQLQKNVDGV 114
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_BACFR (Tyrosyl-tRNA synthetase OS=Bacteroides fragilis GN=tyrS PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.792e-18 Identity = 48/103 (46.60%), Postives = 66/103 (64.08%), Query Frame = 1 Query: 235 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRK 543 N V+ L RG++ + LA ++ + Y G DPTA+SLH+G+L G+++L F RCGH+ +ALIGGAT +GDPSGKS ER LD +TL N I+K Sbjct: 2 NFVEELRWRGMVHDMMPGTEELLA---KEQVTAYVGIDPTADSLHIGHLCGVMILRHFQRCGHKPLALIGGATGMIGDPSGKSAERNLLDEETLRHNQACIKK 101
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_BACFN (Tyrosyl-tRNA synthetase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=tyrS PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.792e-18 Identity = 48/103 (46.60%), Postives = 66/103 (64.08%), Query Frame = 1 Query: 235 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRK 543 N V+ L RG++ + LA ++ + Y G DPTA+SLH+G+L G+++L F RCGH+ +ALIGGAT +GDPSGKS ER LD +TL N I+K Sbjct: 2 NFVEELRWRGMVHDMMPGTEELLA---KEQVTAYVGIDPTADSLHIGHLCGVMILRHFQRCGHKPLALIGGATGMIGDPSGKSAERNLLDEETLRHNQACIKK 101
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_BACTN (Tyrosyl-tRNA synthetase OS=Bacteroides thetaiotaomicron GN=tyrS PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.341e-18 Identity = 48/103 (46.60%), Postives = 66/103 (64.08%), Query Frame = 1 Query: 235 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRK 543 N V+ L RG+L+ I L N++ + Y G DPTA+SLH+G+L G+++L RCGH+ +ALIGGAT +GDPSGKS ER L+ +TL N I+K Sbjct: 2 NFVEELRWRGMLQDIMPGTEELL---NKEQVTAYLGIDPTADSLHIGHLCGVMILRHLQRCGHKPLALIGGATGMIGDPSGKSAERNLLNEETLRHNQACIKK 101
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_DESOH (Tyrosyl-tRNA synthetase OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=tyrS PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 3.057e-18 Identity = 52/121 (42.98%), Postives = 75/121 (61.98%), Query Frame = 1 Query: 235 NVVDTLERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTI--FGSSNVVILN 588 +VVD L RG +E+ T + LR LA+ E + Y GFDPTA SLH+G+L+ I+ L+ R GH+ +AL+GG T VGDPSGK+ R + +T+E NI GI++ S F +++N Sbjct: 2 SVVDILSERGFVEAFTHEQELRDLAA--ESAVTCYIGFDPTASSLHVGSLVPIMALAHMQRNGHRPIALVGGGTGLVGDPSGKTEMRQLITPETVEANIEGIQRQLSRFIDFDGGKALLVN 120
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_FLAPJ (Tyrosyl-tRNA synthetase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=tyrS PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 5.215e-18 Identity = 50/115 (43.48%), Postives = 71/115 (61.74%), Query Frame = 1 Query: 235 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTI--FGSSN 573 N+V+ L+ RGL + L +++ Y GFDPTA+SLH+G+++ II+L GH+ +ALIGGAT +GDPSGKS ER LD TL KN+ GI+ S+ F ++N Sbjct: 3 NLVEELKWRGLFHDMMPGTEEQLT---KESTTAYIGFDPTADSLHIGSMVQIILLVHLKNFGHKPIALIGGATGMIGDPSGKSDERNLLDEATLNKNVAGIKAVLSSFLDFNTTN 114 The following BLAST results are available for this feature:
BLAST of CX294898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 360
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX294898 ID=CX294898; Name=CX294898; organism=Citrus clementina; type=EST; length=596bpback to top |