CX295252

Overview
NameCX295252
Unique NameCX295252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4330 contig Ccv1_Contig4330:95..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SR54C_ARATH (Signal recognition particle 54 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=FFC PE=1 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 1.567e-80
Identity = 164/221 (74.21%), Postives = 177/221 (80.09%), Query Frame = 3
Query:    6 RISAGKSTKFVSSWAASSDPTRLSSTSRNLFTRETWGLIDSKSXXXXXXXXXXXXXXAEMFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYIAG 668
            RI A  S+ F      S+      S+SRNL TRE W  + SK+              AEMFGQLT GLEAAW+KLKGEE LTK+NI EPMRDIRRALLEADVSLPVVRRFVQ+VS+QAVG+G+IRGV+PDQQLVKIV DELVKLMGGEVSEL FAKS PTVILLAGLQGVGKTTV AKLA YLKKQGKSCML+AGDVYRPAAIDQLVILGEQVGVPVY AG
Sbjct:   23 RIKAAFSSAFTGGTINSAS----LSSSRNLSTREIWSWVKSKTVVGHGRYRRSQVR-AEMFGQLTGGLEAAWSKLKGEEVLTKDNIAEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGMGVIRGVKPDQQLVKIVHDELVKLMGGEVSELQFAKSGPTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVYRPAAIDQLVILGEQVGVPVYTAG 238          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_SYNE7 (Signal sequence-binding protein OS=Synechococcus elongatus (strain PCC 7942) GN=ffh PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.636e-45
Identity = 90/162 (55.56%), Postives = 122/162 (75.31%), Query Frame = 3
Query:  183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYIAG 668
            MF  L   LE AW KL+G++ +++ N+ E ++++RRALLEADV+L VV+ F+  V E+AVG  +I G+RPDQQ +K+V DELV++MG     L  A   PTVIL+AGLQG GKTT +AKLA +L+K+G+S +LVA DVYRPAAIDQL+ LG+Q+ VPV+  G
Sbjct:    1 MFDALAERLEQAWTKLRGQDKISESNVQEALKEVRRALLEADVNLGVVKEFIAQVQEKAVGTQVISGIRPDQQFIKVVYDELVQVMGETHVPLAQAAKAPTVILMAGLQGAGKTTATAKLALHLRKEGRSTLLVATDVYRPAAIDQLITLGKQIDVPVFELG 162          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_SYNY3 (Signal recognition particle protein OS=Synechocystis sp. (strain PCC 6803) GN=ffh PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.820e-43
Identity = 89/162 (54.94%), Postives = 118/162 (72.84%), Query Frame = 3
Query:  183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYIAG 668
            MF  L   LE AW KL+G++ +++ NI E ++++RRALL ADV+L VV+ F++ V ++A+G  +I GV P QQ +KIV DELV LMG     L  A+  PTVIL+AGLQG GKTT +AKLA YL+KQ +S ++VA DVYRPAAIDQL  LG+Q+ VPV+  G
Sbjct:    1 MFDALADRLEDAWKKLRGQDKISESNIKEALQEVRRALLAADVNLQVVKGFIKDVEQKALGADVISGVNPGQQFIKIVYDELVNLMGESNVPLAQAEQAPTVILMAGLQGTGKTTATAKLALYLRKQKRSALMVATDVYRPAAIDQLKTLGQQIDVPVFDLG 162          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_MYCTU (Signal recognition particle protein OS=Mycobacterium tuberculosis GN=ffh PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.316e-38
Identity = 83/159 (52.20%), Postives = 113/159 (71.07%), Query Frame = 3
Query:  183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            MF  L+  L AA   L+G+  LT  +I    R+IR ALLEADVSLPVVR F+  + E+A G  +   + P QQ+VKIV +EL+ ++GGE  EL FAK+ PTV++LAGLQG GKTT++ KLA  L+ QG + +LVA D+ RPAA++QL ++GE+ GVPV+
Sbjct:    1 MFESLSDRLTAALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFIHRIKERARGAEVSSALNPAQQVVKIVNEELISILGGETRELAFAKTPPTVVMLAGLQGSGKTTLAGKLAARLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVF 159          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_MYCBO (Signal recognition particle protein OS=Mycobacterium bovis GN=ffh PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.316e-38
Identity = 83/159 (52.20%), Postives = 113/159 (71.07%), Query Frame = 3
Query:  183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            MF  L+  L AA   L+G+  LT  +I    R+IR ALLEADVSLPVVR F+  + E+A G  +   + P QQ+VKIV +EL+ ++GGE  EL FAK+ PTV++LAGLQG GKTT++ KLA  L+ QG + +LVA D+ RPAA++QL ++GE+ GVPV+
Sbjct:    1 MFESLSDRLTAALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFIHRIKERARGAEVSSALNPAQQVVKIVNEELISILGGETRELAFAKTPPTVVMLAGLQGSGKTTLAGKLAARLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVF 159          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_BACSU (Signal recognition particle protein OS=Bacillus subtilis GN=ffh PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.142e-37
Identity = 80/162 (49.38%), Postives = 117/162 (72.22%), Query Frame = 3
Query:  186 FGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYL-KKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYIAG 668
            F  L   L+   +K++G+  ++++++ E MR++R ALLEADV+  VV+ FV+ VSE+AVG  +++ + P QQ++K+V++EL +LMGGE S++  AK  PTVI++ GLQG GKTT S KLAN L KK  +  MLVA D+YRPAAI QL  LG+Q+ +PV+  G
Sbjct:    3 FEGLADRLQQTISKIRGKGKVSEQDVKEMMREVRLALLEADVNFKVVKDFVKKVSERAVGQDVMKSLTPGQQVIKVVQEELTELMGGEESKIAVAKRPPTVIMMVGLQGAGKTTTSGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQLDMPVFSLG 164          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_MYCLE (Signal recognition particle protein OS=Mycobacterium leprae GN=ffh PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.140e-37
Identity = 80/159 (50.31%), Postives = 112/159 (70.44%), Query Frame = 3
Query:  183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            MF  L++ L      L+G+  LT  +I    R+IR AL EADVSLPVVR FV  + E+A G  +   + P QQ+VKIV +EL+ ++GGE  +L FAK+ PTV++LAGLQG GKTT++ KLA  L++QG + +LVA D+ RPAA++QL ++GE+ GVPV+
Sbjct:    1 MFESLSNRLTGVIQGLRGKGRLTDADIEATTREIRLALFEADVSLPVVRAFVHRIKERARGTEVSAALNPAQQIVKIVNEELIGILGGETRQLAFAKTPPTVVMLAGLQGSGKTTLAGKLAVRLRRQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVF 159          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_STRMU (Signal recognition particle protein OS=Streptococcus mutans GN=ffh PE=3 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 1.300e-34
Identity = 73/162 (45.06%), Postives = 113/162 (69.75%), Query Frame = 3
Query:  186 FGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYL-KKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYIAG 668
            F  LT  L+  +  L+G+  L+++++ E  ++IR ALLEADV+LPVV+ F++ V ++AVG  +I  + P QQ++KIV +EL  ++G E +E+  +   PT+I++ GLQG GKTT + KLAN L K++    +++A D+YRPAAIDQL  LG+Q+ VPV+  G
Sbjct:    3 FESLTERLQGVFKNLRGKRKLSEKDVQEVTKEIRLALLEADVALPVVKEFIKRVRKRAVGHEVIDTLDPSQQIIKIVNEELTAVLGSETAEIEKSSKIPTIIMMVGLQGAGKTTFAGKLANKLVKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMG 164          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_ECOLI (Signal recognition particle protein OS=Escherichia coli (strain K12) GN=ffh PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.437e-33
Identity = 78/160 (48.75%), Postives = 102/160 (63.75%), Query Frame = 3
Query:  183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            MF  LT  L      + G   LT++N+ + +R++R ALLEADV+LPVVR F+  V E+AVG  + + + P Q+ VKIVR+ELV  MG E   L  A   P V+L+AGLQG GKTT   KL  +L+ K  K  ++V+ DVYRPAAI QL  L EQVGV  +
Sbjct:    1 MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFF 160          
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_ECOL6 (Signal recognition particle protein OS=Escherichia coli O6 GN=ffh PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.437e-33
Identity = 78/160 (48.75%), Postives = 102/160 (63.75%), Query Frame = 3
Query:  183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659
            MF  LT  L      + G   LT++N+ + +R++R ALLEADV+LPVVR F+  V E+AVG  + + + P Q+ VKIVR+ELV  MG E   L  A   P V+L+AGLQG GKTT   KL  +L+ K  K  ++V+ DVYRPAAI QL  L EQVGV  +
Sbjct:    1 MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFF 160          
The following BLAST results are available for this feature:
BLAST of CX295252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
SR54C_ARATH1.567e-8074.21Signal recognition particle 54 kDa protein, chloro... [more]
SRP54_SYNE71.636e-4555.56Signal sequence-binding protein OS=Synechococcus e... [more]
SRP54_SYNY35.820e-4354.94Signal recognition particle protein OS=Synechocyst... [more]
SRP54_MYCTU4.316e-3852.20Signal recognition particle protein OS=Mycobacteri... [more]
SRP54_MYCBO4.316e-3852.20Signal recognition particle protein OS=Mycobacteri... [more]
SRP54_BACSU2.142e-3749.38Signal recognition particle protein OS=Bacillus su... [more]
SRP54_MYCLE8.140e-3750.31Signal recognition particle protein OS=Mycobacteri... [more]
SRP54_STRMU1.300e-3445.06Signal recognition particle protein OS=Streptococc... [more]
SRP54_ECOLI1.437e-3348.75Signal recognition particle protein OS=Escherichia... [more]
SRP54_ECOL61.437e-3348.75Signal recognition particle protein OS=Escherichia... [more]

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Properties
Property NameValue
Genbank descriptionC05070C06SK PhIFruit1 Citrus clementina cDNA clone C05070C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295252 ID=CX295252; Name=CX295252; organism=Citrus clementina; type=EST; length=670bp
ATTCCAGAATATCGGCGGGAAAATCCACTAAGTTTGTCTCCTCGTGGGCC
GCCTCCAGCGACCCTACTCGACTCTCTTCCACTTCGAGAAATTTGTTCAC
CAGAGAGACGTGGGGCTTGATAGACTCCAAAAGTGTTACTATTAGAAGAA
ATGGTAGAAGACGTTTGGTAGTGAGAGCAGAAATGTTTGGGCAGTTAACA
AGCGGCCTCGAGGCAGCTTGGAACAAGCTCAAAGGAGAAGAGACTTTAAC
CAAGGAGAATATTGTGGAACCCATGAGAGACATTAGAAGAGCTCTTCTGG
AAGCAGATGTAAGTCTTCCTGTTGTTAGAAGGTTTGTCCAAGCAGTCAGT
GAACAAGCGGTTGGTGTGGGCCTGATTCGGGGAGTAAGACCTGATCAGCA
ATTGGTCAAGATTGTTCGTGATGAACTTGTGAAATTGATGGGTGGAGAAG
TGTCTGAGTTAGTTTTTGCAAAATCAAGACCCACTGTGATACTACTGGCT
GGTCTACAAGGAGTTGGAAAGACAACTGTTTCAGCAAAGTTAGCTAATTA
TCTTAAGAAACAGGGAAAGAGTTGCATGCTCGTTGCTGGAGATGTGTACA
GACCTGCTGCTATTGACCAACTTGTTATTCTGGGTGAGCAGGTAGGTGTG
CCAGTTTATATAGCAGGGAC
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