CX295252
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SR54C_ARATH (Signal recognition particle 54 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=FFC PE=1 SV=1) HSP 1 Score: 298.901 bits (764), Expect = 1.567e-80 Identity = 164/221 (74.21%), Postives = 177/221 (80.09%), Query Frame = 3 Query: 6 RISAGKSTKFVSSWAASSDPTRLSSTSRNLFTRETWGLIDSKSXXXXXXXXXXXXXXAEMFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYIAG 668 RI A S+ F S+ S+SRNL TRE W + SK+ AEMFGQLT GLEAAW+KLKGEE LTK+NI EPMRDIRRALLEADVSLPVVRRFVQ+VS+QAVG+G+IRGV+PDQQLVKIV DELVKLMGGEVSEL FAKS PTVILLAGLQGVGKTTV AKLA YLKKQGKSCML+AGDVYRPAAIDQLVILGEQVGVPVY AG Sbjct: 23 RIKAAFSSAFTGGTINSAS----LSSSRNLSTREIWSWVKSKTVVGHGRYRRSQVR-AEMFGQLTGGLEAAWSKLKGEEVLTKDNIAEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGMGVIRGVKPDQQLVKIVHDELVKLMGGEVSELQFAKSGPTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVYRPAAIDQLVILGEQVGVPVYTAG 238
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_SYNE7 (Signal sequence-binding protein OS=Synechococcus elongatus (strain PCC 7942) GN=ffh PE=3 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 1.636e-45 Identity = 90/162 (55.56%), Postives = 122/162 (75.31%), Query Frame = 3 Query: 183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYIAG 668 MF L LE AW KL+G++ +++ N+ E ++++RRALLEADV+L VV+ F+ V E+AVG +I G+RPDQQ +K+V DELV++MG L A PTVIL+AGLQG GKTT +AKLA +L+K+G+S +LVA DVYRPAAIDQL+ LG+Q+ VPV+ G Sbjct: 1 MFDALAERLEQAWTKLRGQDKISESNVQEALKEVRRALLEADVNLGVVKEFIAQVQEKAVGTQVISGIRPDQQFIKVVYDELVQVMGETHVPLAQAAKAPTVILMAGLQGAGKTTATAKLALHLRKEGRSTLLVATDVYRPAAIDQLITLGKQIDVPVFELG 162
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_SYNY3 (Signal recognition particle protein OS=Synechocystis sp. (strain PCC 6803) GN=ffh PE=3 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 5.820e-43 Identity = 89/162 (54.94%), Postives = 118/162 (72.84%), Query Frame = 3 Query: 183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYIAG 668 MF L LE AW KL+G++ +++ NI E ++++RRALL ADV+L VV+ F++ V ++A+G +I GV P QQ +KIV DELV LMG L A+ PTVIL+AGLQG GKTT +AKLA YL+KQ +S ++VA DVYRPAAIDQL LG+Q+ VPV+ G Sbjct: 1 MFDALADRLEDAWKKLRGQDKISESNIKEALQEVRRALLAADVNLQVVKGFIKDVEQKALGADVISGVNPGQQFIKIVYDELVNLMGESNVPLAQAEQAPTVILMAGLQGTGKTTATAKLALYLRKQKRSALMVATDVYRPAAIDQLKTLGQQIDVPVFDLG 162
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_MYCTU (Signal recognition particle protein OS=Mycobacterium tuberculosis GN=ffh PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 4.316e-38 Identity = 83/159 (52.20%), Postives = 113/159 (71.07%), Query Frame = 3 Query: 183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 MF L+ L AA L+G+ LT +I R+IR ALLEADVSLPVVR F+ + E+A G + + P QQ+VKIV +EL+ ++GGE EL FAK+ PTV++LAGLQG GKTT++ KLA L+ QG + +LVA D+ RPAA++QL ++GE+ GVPV+ Sbjct: 1 MFESLSDRLTAALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFIHRIKERARGAEVSSALNPAQQVVKIVNEELISILGGETRELAFAKTPPTVVMLAGLQGSGKTTLAGKLAARLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVF 159
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_MYCBO (Signal recognition particle protein OS=Mycobacterium bovis GN=ffh PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 4.316e-38 Identity = 83/159 (52.20%), Postives = 113/159 (71.07%), Query Frame = 3 Query: 183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 MF L+ L AA L+G+ LT +I R+IR ALLEADVSLPVVR F+ + E+A G + + P QQ+VKIV +EL+ ++GGE EL FAK+ PTV++LAGLQG GKTT++ KLA L+ QG + +LVA D+ RPAA++QL ++GE+ GVPV+ Sbjct: 1 MFESLSDRLTAALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFIHRIKERARGAEVSSALNPAQQVVKIVNEELISILGGETRELAFAKTPPTVVMLAGLQGSGKTTLAGKLAARLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVF 159
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_BACSU (Signal recognition particle protein OS=Bacillus subtilis GN=ffh PE=1 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 2.142e-37 Identity = 80/162 (49.38%), Postives = 117/162 (72.22%), Query Frame = 3 Query: 186 FGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYL-KKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYIAG 668 F L L+ +K++G+ ++++++ E MR++R ALLEADV+ VV+ FV+ VSE+AVG +++ + P QQ++K+V++EL +LMGGE S++ AK PTVI++ GLQG GKTT S KLAN L KK + MLVA D+YRPAAI QL LG+Q+ +PV+ G Sbjct: 3 FEGLADRLQQTISKIRGKGKVSEQDVKEMMREVRLALLEADVNFKVVKDFVKKVSERAVGQDVMKSLTPGQQVIKVVQEELTELMGGEESKIAVAKRPPTVIMMVGLQGAGKTTTSGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQLDMPVFSLG 164
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_MYCLE (Signal recognition particle protein OS=Mycobacterium leprae GN=ffh PE=3 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 8.140e-37 Identity = 80/159 (50.31%), Postives = 112/159 (70.44%), Query Frame = 3 Query: 183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 MF L++ L L+G+ LT +I R+IR AL EADVSLPVVR FV + E+A G + + P QQ+VKIV +EL+ ++GGE +L FAK+ PTV++LAGLQG GKTT++ KLA L++QG + +LVA D+ RPAA++QL ++GE+ GVPV+ Sbjct: 1 MFESLSNRLTGVIQGLRGKGRLTDADIEATTREIRLALFEADVSLPVVRAFVHRIKERARGTEVSAALNPAQQIVKIVNEELIGILGGETRQLAFAKTPPTVVMLAGLQGSGKTTLAGKLAVRLRRQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVF 159
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_STRMU (Signal recognition particle protein OS=Streptococcus mutans GN=ffh PE=3 SV=3) HSP 1 Score: 146.362 bits (368), Expect = 1.300e-34 Identity = 73/162 (45.06%), Postives = 113/162 (69.75%), Query Frame = 3 Query: 186 FGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYL-KKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYIAG 668 F LT L+ + L+G+ L+++++ E ++IR ALLEADV+LPVV+ F++ V ++AVG +I + P QQ++KIV +EL ++G E +E+ + PT+I++ GLQG GKTT + KLAN L K++ +++A D+YRPAAIDQL LG+Q+ VPV+ G Sbjct: 3 FESLTERLQGVFKNLRGKRKLSEKDVQEVTKEIRLALLEADVALPVVKEFIKRVRKRAVGHEVIDTLDPSQQIIKIVNEELTAVLGSETAEIEKSSKIPTIIMMVGLQGAGKTTFAGKLANKLVKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMG 164
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_ECOLI (Signal recognition particle protein OS=Escherichia coli (strain K12) GN=ffh PE=1 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.437e-33 Identity = 78/160 (48.75%), Postives = 102/160 (63.75%), Query Frame = 3 Query: 183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 MF LT L + G LT++N+ + +R++R ALLEADV+LPVVR F+ V E+AVG + + + P Q+ VKIVR+ELV MG E L A P V+L+AGLQG GKTT KL +L+ K K ++V+ DVYRPAAI QL L EQVGV + Sbjct: 1 MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFF 160
BLAST of CX295252 vs. ExPASy Swiss-Prot
Match: SRP54_ECOL6 (Signal recognition particle protein OS=Escherichia coli O6 GN=ffh PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.437e-33 Identity = 78/160 (48.75%), Postives = 102/160 (63.75%), Query Frame = 3 Query: 183 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK-KQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVY 659 MF LT L + G LT++N+ + +R++R ALLEADV+LPVVR F+ V E+AVG + + + P Q+ VKIVR+ELV MG E L A P V+L+AGLQG GKTT KL +L+ K K ++V+ DVYRPAAI QL L EQVGV + Sbjct: 1 MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFF 160 The following BLAST results are available for this feature:
BLAST of CX295252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 110
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295252 ID=CX295252; Name=CX295252; organism=Citrus clementina; type=EST; length=670bpback to top |