CX295623
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295623 vs. ExPASy Swiss-Prot
Match: RING1_ARATH (E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=2 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 8.992e-46 Identity = 85/111 (76.58%), Postives = 96/111 (86.49%), Query Frame = 2 Query: 2 SKEDIERLSKFKFRRMVDTEK-LSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSNQDREEV 331 SKEDIE+L+KFKFR++ D K +D+ QG+ GIMTECGT++P EH L EDAECCICLSAY+DG ELRELPCGHHFHC+CVDKWLYINATCPLCKYNILK SSN DREEV Sbjct: 299 SKEDIEQLTKFKFRKLGDANKHTNDEAQGTTEGIMTECGTDSPIEHTLLQEDAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCKYNILK-SSNLDREEV 408
BLAST of CX295623 vs. ExPASy Swiss-Prot
Match: RING2_ARATH (E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana GN=At1g63170 PE=2 SV=2) HSP 1 Score: 181.415 bits (459), Expect = 4.463e-45 Identity = 82/113 (72.57%), Postives = 96/113 (84.96%), Query Frame = 2 Query: 2 SKEDIERLSKFKFRRMVDTEKLSDD---GQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSNQDREEV 331 SKEDI++L+KFKFR++ DT K + D GQG GG+MTECGT++P EH L +EDAECCICLSAY+D ELRELPCGHHFHC CVDKWLYINATCPLCKYNILKSS+ ++ EEV Sbjct: 269 SKEDIDQLTKFKFRKVGDTMKHTVDEEQGQGDSGGVMTECGTDSPVEHALPHEDAECCICLSAYEDETELRELPCGHHFHCGCVDKWLYINATCPLCKYNILKSSNYEEGEEV 381
BLAST of CX295623 vs. ExPASy Swiss-Prot
Match: RING4_ARATH (E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 6.459e-36 Identity = 66/105 (62.86%), Postives = 83/105 (79.05%), Query Frame = 2 Query: 2 SKEDIERLSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSNQ 316 SK DI+++ KF+F + + EKLS G GIMTECGT++P E LS EDAECCICL Y+DGVELRELPC HHFHC C+DKWL+IN+ CPLCK+NILK+++N+ Sbjct: 289 SKNDIDQMPKFRFTKTGNVEKLS----GKARGIMTECGTDSPIERSLSPEDAECCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPLCKFNILKNANNE 389
BLAST of CX295623 vs. ExPASy Swiss-Prot
Match: ZNRF3_HUMAN (Zinc/RING finger protein 3 OS=Homo sapiens GN=ZNRF3 PE=2 SV=3) HSP 1 Score: 74.3294 bits (181), Expect = 7.683e-13 Identity = 38/104 (36.54%), Postives = 57/104 (54.81%), Query Frame = 2 Query: 2 SKEDIERLSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSN 313 S+ + RL+ +M +T K + +G + G CG + + S+ ++C ICL Y DG ELR +PC H FH CVD WL + TCP C++NI++ N Sbjct: 247 SQNSMNRLAVQALEKM-ETRKFNSKSKGRREG---SCGAL---DTLSSSSTSDCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCRHNIIEQKGN 343
BLAST of CX295623 vs. ExPASy Swiss-Prot
Match: ZNRF3_MOUSE (Zinc/RING finger protein 3 OS=Mus musculus GN=Znrf3 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.003e-12 Identity = 38/104 (36.54%), Postives = 56/104 (53.85%), Query Frame = 2 Query: 2 SKEDIERLSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSN 313 S+ + RL+ +M +T K + +G + G CG + + S ++C ICL Y DG ELR +PC H FH CVD WL + TCP C++NI++ N Sbjct: 244 SQNSMNRLAVQALEKM-ETRKFNSKSKGRREG---SCGAL---DTLSSGSTSDCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCRHNIIEQKGN 340
BLAST of CX295623 vs. ExPASy Swiss-Prot
Match: ATL3D_ARATH (RING-H2 finger protein ATL3D OS=Arabidopsis thaliana GN=ATL3D PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.892e-11 Identity = 27/62 (43.55%), Postives = 41/62 (66.13%), Query Frame = 2 Query: 131 EHVLSNEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPLCKYNILKSSSN 313 E E+ ECCICL +++G +++ LP C H +HC CVD+WL ++CPLC+ +I SS+ Sbjct: 97 ERAEEEEEKECCICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSIRVDSSS 158
BLAST of CX295623 vs. ExPASy Swiss-Prot
Match: RNF13_CHICK (RING finger protein 13 OS=Gallus gallus GN=RNF13 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.506e-11 Identity = 28/56 (50.00%), Postives = 35/56 (62.50%), Query Frame = 2 Query: 161 CCICLSAYDDGVELRELPCGHHFHCACVDKWL-YINATCPLCKYNILKSSSNQDRE 325 C ICL Y+DG +LR LPC H +HC CVD WL TCP+CK ++ S + D E Sbjct: 240 CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSE 295
BLAST of CX295623 vs. ExPASy Swiss-Prot
Match: ATL4O_ARATH (RING-H2 finger protein ATL4O OS=Arabidopsis thaliana GN=ATL4O PE=2 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 7.191e-11 Identity = 33/95 (34.74%), Postives = 50/95 (52.63%), Query Frame = 2 Query: 68 SDDGQGSQGGIMTECGTETP-------NEHVLSNEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPLCKYNILKSSSNQDREE 328 ++DG +GG+ P E + ++D EC ICL+ +D +R LP C H FH C+D WLY +ATCP+C+ N+ S+ E+ Sbjct: 85 ANDGSSRRGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNLTAKSNKPGDED 179 The following BLAST results are available for this feature:
BLAST of CX295623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX295623 ID=CX295623; Name=CX295623; organism=Citrus clementina; type=EST; length=745bpback to top |