CX295840

Overview
NameCX295840
Unique NameCX295840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295840 vs. ExPASy Swiss-Prot
Match: FLA2_ARATH (Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana GN=FLA2 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.019e-49
Identity = 95/161 (59.01%), Postives = 121/161 (75.16%), Query Frame = 3
Query:   54 VLNSDEAEAPTPGPSGLNLTAIMAKQGCKAFADLLIATGAHTTFEENLDGGLTVFCPTDAVVNDFMPKYKNLTEAHKVSLLLYHGTPVYQSLQTLKSSNGVMNTLATDGASKYDFTVQNDGEIVXXXXXXXXXXXXXXXXDEEPLVIYKINKVLLPIELFK 536
            VL S EAEAPT  PS L LT I+ KQGCKAF+D+L +TGA  TF++ +DGGLTVFCP+D+ V  FMPK+K+L+ A+K +L+LYHG PVYQSLQ L+S NG +NTLAT+G +K+DFTVQNDGE V                D+EPL++YKI+KVLLP E++K
Sbjct:  173 VLTSPEAEAPTASPSDLILTTILEKQGCKAFSDILKSTGADKTFQDTVDGGLTVFCPSDSAVGKFMPKFKSLSPANKTALVLYHGMPVYQSLQMLRSGNGAVNTLATEGNNKFDFTVQNDGEDVTLETDVVTAKVMGTLKDQEPLIVYKIDKVLLPREIYK 333          
BLAST of CX295840 vs. ExPASy Swiss-Prot
Match: FLA1_ARATH (Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana GN=FLA1 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 9.558e-40
Identity = 84/162 (51.85%), Postives = 106/162 (65.43%), Query Frame = 3
Query:   54 VLNSDEAEAPTPGPSGLNLTAIMAKQGCKAFADLLIAT-GAHTTFEENLDGGLTVFCPTDAVVNDFMPKYKNLTEAHKVSLLLYHGTPVYQSLQTLKSSNGVMNTLATDGASKYDFTVQNDGEIVXXXXXXXXXXXXXXXXDEEPLVIYKINKVLLPIELFK 536
            VL S+ A APTP P+ +NLT IM+  GCK FA+ L+   GA  T++E+L+GG+TVFCP D  +  F+PKYKNLT   K + L +   P Y S+  LKS+NG MNTLATDGA+K++ TVQNDGE V                DE+PL IY  +KVLLP ELFK
Sbjct:  169 VLPSETAAAPTPAPAEMNLTGIMSAHGCKVFAETLLTNPGASKTYQESLEGGMTVFCPGDDAMKGFLPKYKNLTAPKKEAFLDFLAVPTYYSMAMLKSNNGPMNTLATDGANKFELTVQNDGEKVTLKTRINTVKIVDTLIDEQPLAIYATDKVLLPKELFK 330          
BLAST of CX295840 vs. ExPASy Swiss-Prot
Match: FLA10_ARATH (Fasciclin-like arabinogalactan protein 10 OS=Arabidopsis thaliana GN=FLA10 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.340e-25
Identity = 64/154 (41.56%), Postives = 90/154 (58.44%), Query Frame = 3
Query:   78 APTPGPSGL-NLTAIMAKQGCKAFADLLIATGAHTTFEENLDGGLTVFCPTD-AVVNDFMPKYKNLTEAHKVSLLLYHGTPVYQSLQTLKSSNGVMNTLATDGASKYDFTVQNDGEIVXXXXXXXXXXXXXXXXDEEPLVIYKINKVLLPIELF 533
            AP P  +G+ N+T ++ K GCK FA+LL+++G   TFE  ++ GLTVF P+D A     +P   NLT+A  VSLL YH    Y+   +LK++   ++TLAT+GA KYD T    G+ V                DE P+VI+ ++ VLLP ELF
Sbjct:  180 APAPSSAGVSNITGLLEKAGCKTFANLLVSSGVIKTFESTVEKGLTVFAPSDEAFKARGVPDLTNLTQAEVVSLLEYHALAEYKPKGSLKTNKDAISTLATNGAGKYDLTTSTSGDEVILHTGVGPSRLADTVVDETPVVIFTVDNVLLPAELF 333          
BLAST of CX295840 vs. ExPASy Swiss-Prot
Match: FLA8_ARATH (Fasciclin-like arabinogalactan protein 8 OS=Arabidopsis thaliana GN=FLA8 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.254e-23
Identity = 60/153 (39.22%), Postives = 87/153 (56.86%), Query Frame = 3
Query:   78 APTPGPSGLNLTAIMAKQGCKAFADLLIATGAHTTFEENLDGGLTVFCPTD-AVVNDFMPKYKNLTEAHKVSLLLYHGTPVYQSLQTLKSSNGVMNTLATDGASKYDFTVQNDGEIVXXXXXXXXXXXXXXXXDEEPLVIYKINKVLLPIELF 533
            AP P  S  N+T ++ K GCK FA+LL+++G   T+E  ++ GLTVF P+D A   + +P    LT+A  VSLL YH    Y+   +LK++   ++TLAT+GA K+D T    G+ V                D  P+VI+ ++ VLLP ELF
Sbjct:  180 APAPSASLSNITGLLEKAGCKTFANLLVSSGVLKTYESAVEKGLTVFAPSDEAFKAEGVPDLTKLTQAEVVSLLEYHALAEYKPKGSLKTNKNNISTLATNGAGKFDLTTSTSGDEVILHTGVAPSRLADTVLDATPVVIFTVDNVLLPAELF 332          
BLAST of CX295840 vs. ExPASy Swiss-Prot
Match: FLA4_ARATH (Fasciclin-like arabinogalactan protein 4 OS=Arabidopsis thaliana GN=FLA4 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.898e-12
Identity = 55/159 (34.59%), Postives = 81/159 (50.94%), Query Frame = 3
Query:   84 TPGPSGLNLTAIMAK-QGCKAFADLLIATGAHTTFEENLDG-GLTVFCPTDAVVNDFMPKYKNLTEA---HKVSLLLYHGTPVYQSLQTLKS-SNGVMNTLATD--GASKYDFTVQN-DGEIVXXXXXXXXXXXXXXXXDEEPLVIYKINKVLLPIELF 533
            +P P+G+NLT I+           LL+A+G  T FE +  G G+TVF PTD+  +D +P   NL       K  +L +H    Y +L +L+S +N V  TLAT+  GA  Y   +   +G IV                D+ P+ ++ ++KVLLP ELF
Sbjct:  200 SPPPAGINLTQILINGHNFNVALSLLVASGVITEFENDERGAGITVFVPTDSAFSD-LPSNVNLQSLPAEQKAFVLKFHVLHSYYTLGSLESITNPVQPTLATEEMGAGSYTLNISRVNGSIVTINSGVVLAVVTQTAFDQNPVSVFGVSKVLLPKELF 357          
BLAST of CX295840 vs. ExPASy Swiss-Prot
Match: FLA11_ARATH (Fasciclin-like arabinogalactan protein 11 OS=Arabidopsis thaliana GN=FLA11 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.101e-11
Identity = 50/168 (29.76%), Postives = 81/168 (48.21%), Query Frame = 3
Query:   54 VLNSDEAEAPTPGPSG-LNLTAIMAKQG-CKAFADLLIATGA----HTTFEENLDGGLTVFCPTDAVVNDFMPKYKN-LTEAHKVSLLLYHGTPVYQSLQTLKSSNGVMNTLATDGAS-KYDFTVQNDGEIVXXXXXXXXXXXXXXXXDEEPLVIYKINKVLLPIELF 533
            V+ +   +AP PGPSG  N+TAI+ K G    F  LL +T A    +T    +   GLTVF PTD   N       N L++  KV L+ +H  P   ++   ++ +  + T A DG + K+   + + G  V                 ++ L +Y++++VLLP+ +F
Sbjct:   18 VIATTYGQAPAPGPSGPTNITAILEKAGQFTLFIRLLKSTQASDQINTQLNSSSSNGLTVFAPTDNAFNSLKSGTLNSLSDQQKVQLVQFHVLPTLITMPQFQTVSNPLRTQAGDGQNGKFPLNITSSGNQVNITTGVVSATVANSVYSDKQLAVYQVDQVLLPLAMF 185          
BLAST of CX295840 vs. ExPASy Swiss-Prot
Match: FLA7_ARATH (Fasciclin-like arabinogalactan protein 7 OS=Arabidopsis thaliana GN=FLA7 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.204e-11
Identity = 48/159 (30.19%), Postives = 73/159 (45.91%), Query Frame = 3
Query:   78 APTPGPSGLNLTAIMAKQG-CKAFADLLIATGAHTTFEE---NLDGGLTVFCPTD-AVVNDFMPKYKNLTEAHKVSLLLYHGTPVYQSLQTLK--SSNGVMNTLATDGASKYDFTVQNDGEIVXXXXXXXXXXXXXXXXDEEPLVIYKINKVLLPIELF 533
            AP P P  +NLT +++  G    F D L++TG   TF+    N + G+T+F P D A      P   NLT+     L+L+H  P Y SL   K  S +G ++T A     +Y     +    V                  +P+ +Y++N+VLLP  +F
Sbjct:   37 APAPAPENVNLTELLSVAGPFHTFLDYLLSTGVIETFQNQANNTEEGITIFVPKDDAFKAQKNPPLSNLTKDQLKQLVLFHALPHYYSLSEFKNLSQSGPVSTFA---GGQYSLKFTDVSGTVRIDSLWTRTKVSSSVFSTDPVAVYQVNRVLLPEAIF 192          
The following BLAST results are available for this feature:
BLAST of CX295840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
FLA2_ARATH1.019e-4959.01Fasciclin-like arabinogalactan protein 2 OS=Arabid... [more]
FLA1_ARATH9.558e-4051.85Fasciclin-like arabinogalactan protein 1 OS=Arabid... [more]
FLA10_ARATH1.340e-2541.56Fasciclin-like arabinogalactan protein 10 OS=Arabi... [more]
FLA8_ARATH1.254e-2339.22Fasciclin-like arabinogalactan protein 8 OS=Arabid... [more]
FLA4_ARATH2.898e-1234.59Fasciclin-like arabinogalactan protein 4 OS=Arabid... [more]
FLA11_ARATH1.101e-1129.76Fasciclin-like arabinogalactan protein 11 OS=Arabi... [more]
FLA7_ARATH3.204e-1130.19Fasciclin-like arabinogalactan protein 7 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionC05076D11SK DroRLeaf1 Citrus clementina cDNA clone C05076D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295840 ID=CX295840; Name=CX295840; organism=Citrus clementina; type=EST; length=744bp
CGAGGTAATTCAATTATAATTATGTTGCTGATTAAATTTTTAATCATCTT
TAGGTTCTGAACTCGGATGAAGCTGAAGCACCAACACCAGGACCAAGCGG
CCTTAATCTAACGGCTATAATGGCAAAGCAAGGCTGCAAAGCTTTTGCTG
ACTTGTTAATAGCCACAGGAGCTCACACGACTTTTGAAGAAAATCTCGAC
GGGGGCTTAACGGTCTTTTGCCCTACCGACGCCGTCGTGAACGATTTCAT
GCCAAAGTACAAGAACCTAACGGAAGCCCACAAAGTGTCGTTACTGTTAT
ATCACGGCACCCCCGTTTACCAGTCCTTGCAGACGTTGAAGTCGAGCAAC
GGAGTCATGAACACGCTGGCAACTGACGGCGCCAGCAAGTATGACTTCAC
CGTGCAGAATGACGGCGAGATCGTGACGTTAAAGACAAAAGCTACGACGG
CTAAGATAACGGGGACGTTAAAAGATGAAGAGCCGTTGGTCATTTATAAG
ATTAACAAGGTTTTGTTACCCATAGAGTTGTTTAAGCCTGAGGTGGAGAC
CGAAGCTCCGGCACCGGCGCCTACCCCCCACAAACGCAAGACGAAGAAGG
ACAAGGACGAGGCGGAAGCTGATGCACCGGTGGATGATTCTGAGGATCAG
ACGGCTGATAATGAAAATGGGGTGGGTAGAATCAGCGGTGGGCATTTGAT
TTGGATGGTTTTAAGTCGTGCATGGGAATCTTTTCATGTGACGA
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