CX296426
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296426 vs. ExPASy Swiss-Prot
Match: SF3BB_ARATH (Uncharacterized protein At4g14342 OS=Arabidopsis thaliana GN=At4g14342 PE=3 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 6.398e-39 Identity = 73/78 (93.59%), Postives = 77/78 (98.72%), Query Frame = 1 Query: 13 NSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 246 NSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASYIGHYPML+YFAIAENESIGRE YNFMQKMLLPCGLPPERE++ Sbjct: 10 NSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREEE 87
BLAST of CX296426 vs. ExPASy Swiss-Prot
Match: SF3BA_ARATH (Uncharacterized protein At3g23325 OS=Arabidopsis thaliana GN=At3g23325 PE=2 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 6.398e-39 Identity = 73/78 (93.59%), Postives = 76/78 (97.44%), Query Frame = 1 Query: 13 NSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 246 NSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASYIGHYPML+YFAIAENESIGRE YNFMQKMLLPCGLPPERED+ Sbjct: 10 NSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE 87
BLAST of CX296426 vs. ExPASy Swiss-Prot
Match: SF3B5_DROME (Probable splicing factor 3B subunit 5 OS=Drosophila melanogaster GN=CG11985 PE=1 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 6.867e-25 Identity = 50/78 (64.10%), Postives = 61/78 (78.21%), Query Frame = 1 Query: 13 NSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 246 +SQLEHLQ+KY+GTGHAD +FEW N RDS ASY+GHY +L YFAIAENES R +N M++ML PCG PPE+ +D Sbjct: 8 HSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENESKARVRFNLMERMLQPCGPPPEKLED 85
BLAST of CX296426 vs. ExPASy Swiss-Prot
Match: SF3B5_HUMAN (Splicing factor 3B subunit 5 OS=Homo sapiens GN=SF3B5 PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 9.916e-24 Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = 1 Query: 13 NSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 246 +SQLEHLQ+KY+GTGHAD ++EW VN RDSY SY+GH+ +L YFAIAENES R +N M+KML PCG P ++ ++ Sbjct: 8 HSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPCGPPADKPEE 85
BLAST of CX296426 vs. ExPASy Swiss-Prot
Match: SF3B5_BOVIN (Splicing factor 3B subunit 5 OS=Bos taurus GN=SF3B5 PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 9.916e-24 Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = 1 Query: 13 NSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 246 +SQLEHLQ+KY+GTGHAD ++EW VN RDSY SY+GH+ +L YFAIAENES R +N M+KML PCG P ++ ++ Sbjct: 8 HSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPCGPPADKPEE 85
BLAST of CX296426 vs. ExPASy Swiss-Prot
Match: SF3B5_MOUSE (Splicing factor 3B subunit 5 OS=Mus musculus GN=Sf3b5 PE=2 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 1.432e-22 Identity = 46/78 (58.97%), Postives = 60/78 (76.92%), Query Frame = 1 Query: 13 NSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 246 +SQLEHLQ+KY+GTGHAD ++EW VN RDSY SY+GH+ +L YFAIAENES R +N M+KML P G P ++ ++ Sbjct: 8 HSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPSGPPADKPEE 85
BLAST of CX296426 vs. ExPASy Swiss-Prot
Match: SF3B5_DICDI (Splicing factor 3B subunit 5 OS=Dictyostelium discoideum GN=sf3b5 PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 1.583e-21 Identity = 45/78 (57.69%), Postives = 59/78 (75.64%), Query Frame = 1 Query: 13 NSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 246 NSQLEHLQ +YVGTGHAD+++ EW N RDS +S+IGH L+ F+IAENES+GR YN + KM+ PCG P+ +D+ Sbjct: 8 NSQLEHLQMRYVGTGHADISKHEWLTNQHRDSLSSFIGHSSFLSLFSIAENESVGRVRYNTLTKMISPCGPAPKIKDN 85
BLAST of CX296426 vs. ExPASy Swiss-Prot
Match: YHV5_SCHPO (Uncharacterized protein C211.05 OS=Schizosaccharomyces pombe GN=SPBC211.05 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 5.454e-14 Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 1 Query: 16 SQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPP 231 ++LE LQA+YVG G+A ++EW VN RD+ +S +GH P+LAY A A E + N ++KM++PCG PP Sbjct: 9 AKLEQLQARYVGVGNAFTTKYEWMVNQHRDTLSSVVGHPPLLAYMATALGEPRVQVRKNLLEKMIMPCGPPP 80 The following BLAST results are available for this feature:
BLAST of CX296426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX296426 ID=CX296426; Name=CX296426; organism=Citrus clementina; type=EST; length=401bpback to top |