CX296468
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_BRAJA (30S ribosomal protein S9 OS=Bradyrhizobium japonicum GN=rpsI PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.202e-26 Identity = 62/104 (59.62%), Postives = 76/104 (73.08%), Query Frame = -2 Query: 342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653 K+ VN +E +VYF R + +PFS + G +DV CTV GGG+SGQ GAVR GIS+AL +EP+LR L+ GFLTRDSRVVERKK GKAKAR+SFQ+ KR Sbjct: 56 KVTVNSREVEVYFARPVLRMMIEQPFSVAQRSGQYDVICTVAGGGLSGQAGAVRHGISKALTYFEPELRTVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 159
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_RHORT (30S ribosomal protein S9 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rpsI PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 8.366e-26 Identity = 59/104 (56.73%), Postives = 76/104 (73.08%), Query Frame = -2 Query: 342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653 +I VN +E + YFP R + +PF T T +DV CTV GGG+SGQ GA+R GISRAL ++PD+RPAL++ GF+TRD R VERKK G+AKAR+SFQ+ KR Sbjct: 55 RITVNGRELENYFPRPVLRMVINQPFVVTNTTNQFDVVCTVTGGGLSGQAGALRHGISRALTYFDPDMRPALKAEGFMTRDPRTVERKKYGRAKARRSFQFSKR 158
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_RHOP2 (30S ribosomal protein S9 OS=Rhodopseudomonas palustris (strain HaA2) GN=rpsI PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 8.366e-26 Identity = 61/104 (58.65%), Postives = 74/104 (71.15%), Query Frame = -2 Query: 342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653 K+ VN +E +VYF R + +P G +DV CTV GGG+SGQ GAVR GIS+AL N+EP+LR L+ GFLTRDSRVVERKK GKAKAR+SFQ+ KR Sbjct: 55 KVIVNSREVEVYFARPVLRMMIQQPLVAAARAGQYDVICTVAGGGLSGQAGAVRHGISKALTNFEPELRGVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 158
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_RHOPT (30S ribosomal protein S9 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rpsI PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.093e-25 Identity = 61/104 (58.65%), Postives = 73/104 (70.19%), Query Frame = -2 Query: 342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653 KI VN +E + YF R + +P G +DV CTV GGG+SGQ GAVR GIS+AL N+EP+LR L+ GFLTRDSRVVERKK GKAKAR+SFQ+ KR Sbjct: 57 KITVNSREVETYFARPVLRMMIQQPLVAAARAGQYDVICTVAGGGLSGQAGAVRHGISKALTNFEPELRSVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 160
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_RHOPS (30S ribosomal protein S9 OS=Rhodopseudomonas palustris (strain BisB5) GN=rpsI PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.093e-25 Identity = 61/104 (58.65%), Postives = 74/104 (71.15%), Query Frame = -2 Query: 342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653 K+ VN +E +VYF R + +P G +DV CTV GGG+SGQ GAVR GIS+AL N+EP+LR L+ GFLTRDSRVVERKK GKAKAR+SFQ+ KR Sbjct: 55 KVTVNAREVEVYFARPVLRMMIQQPLVAAARAGQYDVICTVAGGGLSGQAGAVRHGISKALTNFEPELRGVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 158
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_RHOPA (30S ribosomal protein S9 OS=Rhodopseudomonas palustris GN=rpsI PE=1 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.093e-25 Identity = 61/104 (58.65%), Postives = 73/104 (70.19%), Query Frame = -2 Query: 342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653 KI VN +E + YF R + +P G +DV CTV GGG+SGQ GAVR GIS+AL N+EP+LR L+ GFLTRDSRVVERKK GKAKAR+SFQ+ KR Sbjct: 57 KITVNSREVETYFARPVLRMMIQQPLVAAARAGQYDVICTVAGGGLSGQAGAVRHGISKALTNFEPELRSVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 160
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_XANP2 (30S ribosomal protein S9 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rpsI PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.427e-25 Identity = 58/104 (55.77%), Postives = 75/104 (72.12%), Query Frame = -2 Query: 342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653 K+ +ND++ +VYF R + +PF G +DV CTV GGG+SGQ GAVR GIS+AL +EP+LR L+ GF+TRDSRVVERKK G+AKAR+SFQ+ KR Sbjct: 57 KVTINDRDIEVYFARPVLRLMINQPFQAAAREGQYDVVCTVSGGGLSGQAGAVRHGISKALTYYEPELRSPLKKGGFITRDSRVVERKKYGRAKARRSFQFSKR 160
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_RHOS5 (30S ribosomal protein S9 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rpsI PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.864e-25 Identity = 62/104 (59.62%), Postives = 75/104 (72.12%), Query Frame = -2 Query: 342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653 K+ VN K D YF + L +PF+ G +DV TV GGG+SGQ GAV+ GIS+ALQ +EP LR AL++AGFLTRDSRVVERKK GKAKAR+SFQ+ KR Sbjct: 57 KVTVNGKPMDEYFARPVLQMILRQPFTVANVTGQFDVMATVAGGGLSGQAGAVKHGISKALQLYEPSLRAALKAAGFLTRDSRVVERKKYGKAKARRSFQFSKR 160
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_OENOB (30S ribosomal protein S9 OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=rpsI PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.864e-25 Identity = 57/104 (54.81%), Postives = 76/104 (73.08%), Query Frame = -2 Query: 342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653 KI +N++ F+ Y P + RA +++PF+ T T G +DV+ V GGG +GQ GA R GI+RAL +PD RPAL+SAG LTRDSR+VERKKPG KAR++ Q+ KR Sbjct: 27 KITINNRSFEEYIPAANLRAVVIQPFAVTSTDGTYDVNVNVVGGGFAGQAGATRHGIARALLQVDPDFRPALKSAGLLTRDSRMVERKKPGLKKARRASQFSKR 130
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_NITHX (30S ribosomal protein S9 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rpsI PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.864e-25 Identity = 61/104 (58.65%), Postives = 74/104 (71.15%), Query Frame = -2 Query: 342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653 KI VN +E +VYF R + +P G +DV CTV GGG+SGQ GAVR G+S+AL N+EP+LR L+ GFLTRDSRVVERKK GKAKAR+SFQ+ KR Sbjct: 55 KILVNAREVEVYFARPVLRMMIQQPLVAAARAGQYDVVCTVAGGGLSGQAGAVRHGLSKALTNFEPELRGVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 158 The following BLAST results are available for this feature:
BLAST of CX296468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX296468 ID=CX296468; Name=CX296468; organism=Citrus clementina; type=EST; length=666bpback to top |