CX296506

Overview
NameCX296506
Unique NameCX296506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9879 contig Ccv1_Contig9879:1..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 3.331e-77
Identity = 118/155 (76.13%), Postives = 136/155 (87.74%), Query Frame = 1
Query:   55 ISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            ISS+ +AT NR +  QAS+ APFTGLKS+ AFP TKK NND +S+ SNGGRVQCMKVWPP GLKK+ETLSYLPPLSDEAL KEI YLIR+ WIPCLEFELE G+VYREHH SPGYYDGRYWTMWKLPM+GCTD+ QV+KEVGE +KEYP++F+R+
Sbjct:    4 ISSSAIATVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRV 158          

HSP 2 Score: 44.669 bits (104), Expect = 3.331e-77
Identity = 20/22 (90.91%), Postives = 20/22 (90.91%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKPPGV 586
            IGFDN RQVQCISFI AKPPGV
Sbjct:  159 IGFDNIRQVQCISFIVAKPPGV 180          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.257e-76
Identity = 125/160 (78.12%), Postives = 142/160 (88.75%), Query Frame = 1
Query:   40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            MASSMISSATVAT +RA+ AQA+MVAPFTGLKS++AFPAT+K+NNDITS+ASNGGRVQCMKVWPP GL+KFETLSYLPPLS E+L K+I YLI  GWIPCLEFELE  +VYRE++RSPGYYDGRYW MWKLPM+GCTDATQVL E+ E  K YP S +RI
Sbjct:    1 MASSMISSATVATVSRATPAQATMVAPFTGLKSTAAFPATRKSNNDITSLASNGGRVQCMKVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPTSHIRI 160          

HSP 2 Score: 43.1282 bits (100), Expect = 1.257e-76
Identity = 19/20 (95.00%), Postives = 19/20 (95.00%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKPP 580
            IGFDNKRQVQCISFIA KPP
Sbjct:  161 IGFDNKRQVQCISFIAYKPP 180          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 3.639e-76
Identity = 124/160 (77.50%), Postives = 140/160 (87.50%), Query Frame = 1
Query:   40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            MA SMISSATVA  +RAS AQ+SMVAPFT LKS+SAFP T+KTNNDITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E L KE+ YL+R   IPCLEFELE G+VYREH+RSPGYYDGRYWTMWKLPM+GC D++QVLKE+ E +K YP +F+RI
Sbjct:    1 MACSMISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRI 160          

HSP 2 Score: 43.1282 bits (100), Expect = 3.639e-76
Identity = 20/22 (90.91%), Postives = 20/22 (90.91%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKPPGV 586
            IGFDNKRQVQ ISFIA KPPGV
Sbjct:  161 IGFDNKRQVQIISFIAYKPPGV 182          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 8.815e-75
Identity = 125/162 (77.16%), Postives = 142/162 (87.65%), Query Frame = 1
Query:   40 MASSMISSATVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            MASSMISS TVAT  A+R + AQA MVAPF GLKSSSAFP T+K+N DITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E+L KE+ YL+R  W+PCLEFELE G+VYRE+HRSPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E +K YP SF+RI
Sbjct:    1 MASSMISSGTVATVSADRPAPAQARMVAPFNGLKSSSAFPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRI 161          

HSP 2 Score: 39.6614 bits (91), Expect = 8.815e-75
Identity = 18/21 (85.71%), Postives = 18/21 (85.71%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKPPG 583
            IGFDN RQVQCISFIA KP G
Sbjct:  162 IGFDNVRQVQCISFIAYKPAG 182          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 2.550e-74
Identity = 125/162 (77.16%), Postives = 142/162 (87.65%), Query Frame = 1
Query:   40 MASSMISSATVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            MASSMISS TVAT  A+R + AQA MVAPFTGLKSSSA P T+K+N DITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E+L KE+ YL+R  W+PCLEFELE G+VYRE+HRSPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E +K YP SF+RI
Sbjct:    1 MASSMISSGTVATVSADRPAPAQARMVAPFTGLKSSSASPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRI 161          

HSP 2 Score: 39.6614 bits (91), Expect = 2.550e-74
Identity = 18/21 (85.71%), Postives = 18/21 (85.71%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKPPG 583
            IGFDN RQVQCISFIA KP G
Sbjct:  162 IGFDNVRQVQCISFIAYKPAG 182          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 4.339e-74
Identity = 119/157 (75.80%), Postives = 139/157 (88.54%), Query Frame = 1
Query:   49 SMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            ++ISSA V T NRAS AQA++VAPFTGLKSS+ FP TKKTNNDITSIASNGGRV CM+VWPP G KKFETLSYLPPL++E L KE+ YLIR GWIPCLEFELEKG+VYRE+HRSPGYYDGRYWTMW+LP++G TD++QVLKE+ + + EYP SF+RI
Sbjct:    2 ALISSAAVTTVNRASSAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRI 158          

HSP 2 Score: 35.4242 bits (80), Expect = 4.339e-74
Identity = 16/19 (84.21%), Postives = 16/19 (84.21%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKP 577
            IGFDN RQVQCISFIA  P
Sbjct:  159 IGFDNVRQVQCISFIAHTP 177          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 1.255e-73
Identity = 118/160 (73.75%), Postives = 135/160 (84.38%), Query Frame = 1
Query:   40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            MASSM+S+ATVA+ NR S AQA+MVAPFTGLKS+  FP T+KTN+DITSI SNGG+VQCMKVWP  G+KKFETLSYLPPL+ E L  E+ YL+RSGWIPCLEFELE G VYREH R PGYYDGRYWTMWKLPM+GCTDA QVLKE+ E+ K +P  + RI
Sbjct:    1 MASSMLSTATVASINRVSPAQATMVAPFTGLKSTPVFPTTRKTNSDITSITSNGGKVQCMKVWPTLGMKKFETLSYLPPLTREQLASEVEYLLRSGWIPCLEFELEHGLVYREHARVPGYYDGRYWTMWKLPMFGCTDAAQVLKELDELIKHHPDGYARI 160          

HSP 2 Score: 42.3578 bits (98), Expect = 1.255e-73
Identity = 18/24 (75.00%), Postives = 20/24 (83.33%), Query Frame = 2
Query:  512 SEFIGFDNKRQVQCISFIAAKPPG 583
            +  IGFDN RQVQCISF+A KPPG
Sbjct:  158 ARIIGFDNVRQVQCISFLAYKPPG 181          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 4.736e-73
Identity = 120/160 (75.00%), Postives = 136/160 (85.00%), Query Frame = 1
Query:   40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            MASSM+S+A VA  NRAS AQASMVAPFTGLKS+SAFP T+KT  DITSIASNGGRVQCM+VWPP G K +ETLSYLPPL+ E L KE+ YL+R GW+PCLEFELE G VYRE+HRSPGYYDGRYWTMWKLPM+GCTDA QVL+E+ E+ K YP  + RI
Sbjct:    1 MASSMLSTAAVACINRASPAQASMVAPFTGLKSTSAFPTTRKTTTDITSIASNGGRVQCMQVWPPRGKKFYETLSYLPPLTREQLAKEVEYLLRKGWVPCLEFELEHGTVYREYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQELDEMIKAYPDCYGRI 160          

HSP 2 Score: 38.891 bits (89), Expect = 4.736e-73
Identity = 17/21 (80.95%), Postives = 18/21 (85.71%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKPPG 583
            IGFDN RQVQCISF+A KP G
Sbjct:  161 IGFDNVRQVQCISFLAYKPKG 181          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.787e-72
Identity = 117/161 (72.67%), Postives = 143/161 (88.82%), Query Frame = 1
Query:   40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNN-DITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            MASS++SSA VAT  R+++AQASMVAPFTGLKS+++FP TKK NN DITS+ASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YL+++GW+PCLEFE E G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RI
Sbjct:    1 MASSIVSSAAVAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRI 159          

HSP 2 Score: 39.6614 bits (91), Expect = 1.787e-72
Identity = 18/21 (85.71%), Postives = 18/21 (85.71%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKPPG 583
            IGFDN RQVQCISFIA KP G
Sbjct:  160 IGFDNVRQVQCISFIAYKPEG 180          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 6.743e-72
Identity = 117/160 (73.12%), Postives = 139/160 (86.88%), Query Frame = 1
Query:   40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            MASS++SSA VAT  R+++AQA+MVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS E LL EI YL++SGW+PCLEFE E+G+VYREHH SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRI
Sbjct:    1 MASSVLSSAAVAT--RSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEIEYLLKSGWVPCLEFETERGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWVRI 158          

HSP 2 Score: 39.6614 bits (91), Expect = 6.743e-72
Identity = 18/21 (85.71%), Postives = 18/21 (85.71%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKPPG 583
            IGFDN RQVQCISFIA KP G
Sbjct:  159 IGFDNVRQVQCISFIAYKPEG 179          
The following BLAST results are available for this feature:
BLAST of CX296506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
RBS_LACSA3.331e-7776.13Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_FAGCR1.257e-7678.13Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_BETVE3.639e-7677.50Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PYRPY8.815e-7577.16Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MALSP2.550e-7477.16Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MEDSA4.339e-7475.80Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MANES1.255e-7373.75Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HEVBR4.736e-7375.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_SOLTU1.787e-7272.67Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS8_NICPL6.743e-7273.13Ribulose bisphosphate carboxylase small chain 8B, ... [more]

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Properties
Property NameValue
Genbank descriptionC05142A05SK FerrChloL1 Citrus clementina cDNA clone C05142A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296506 ID=CX296506; Name=CX296506; organism=Citrus clementina; type=EST; length=709bp
GAGGCCTCGTGCCGAATTCGGCACGAGGAGCAAGTACCAATGGCTTCCTC
AATGATCTCATCGGCCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTC
AGGCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTC
CCAGCAACCAAGAAGACCAACAATGACATTACTTCCATTGCAAGCAACGG
CGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGT
TCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAG
GAAATCAGTTACCTTATCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGA
GTTGGAGAAAGGATGGGTGTACCGTGAGCACCACAGGTCACCAGGATACT
ACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACA
GATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGAAGGAATACCC
ACATTCATTCGTCCGAATTTATCGGATTTGACAACAAGCGTCAAGTGCAG
TGCATCAGTTTCATTGCTGCCAAGCCACCAGGCGTCTAGGTTCCCAATTA
AATTTGTGTAACCACCCATGCAATATTGTTGATTATTATTATGTGTAACC
CCCATAATGATCATTCGATCAATGGGGGTTCGGTTTGCGTTTAATTTGTA
CTTAGGCTG
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