CX296551

Overview
NameCX296551
Unique NameCX296551
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296551 vs. ExPASy Swiss-Prot
Match: IMA1_ARATH (Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.444e-25
Identity = 59/87 (67.82%), Postives = 65/87 (74.71%), Query Frame = -2
Query:  438 AEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV--XXXXXXXXXXXDATQAGFGFAGNGLPVPSGGFNF 692
            AEKN+G+TG +N +AQ IDDAEGLEKIENLQSHDN EIYEKAVKILETYW+             D +QAGF F GN  PVPSGGFNF
Sbjct:  445 AEKNLGHTGDMNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDDETQQPPGVDGSQAGFQFGGNQAPVPSGGFNF 531          
BLAST of CX296551 vs. ExPASy Swiss-Prot
Match: IMA_SOLLC (Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.037e-21
Identity = 52/85 (61.18%), Postives = 62/85 (72.94%), Query Frame = -2
Query:  438 AEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVXXXXXXXXXXXDATQAGFGFAGNGLPVPSGGFNF 692
            A+K++GNT GVN++AQ ID+AEGLEKIENLQSHDNTEIYEKAVKILETYW+              +  F F G  + +PSGGFNF
Sbjct:  446 ADKDLGNTEGVNVYAQLIDEAEGLEKIENLQSHDNTEIYEKAVKILETYWL----EEEDVPVSLNEDQFEFGGADISLPSGGFNF 526          
BLAST of CX296551 vs. ExPASy Swiss-Prot
Match: IMA1B_ORYSJ (Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.940e-21
Identity = 55/86 (63.95%), Postives = 61/86 (70.93%), Query Frame = -2
Query:  435 AEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVXXXXXXXXXXXDATQAGFGFAGNGLPVPSGGFNFG 692
            AEKN+G  G VN +AQ IDDAEGLEKIENLQSHDNTEIYEKAVK+LE+YW+           +A Q GF F      VPSGGFNFG
Sbjct:  451 AEKNLG-AGDVNSYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKMLESYWLEEEDDAMPSGDNA-QNGFNFGNQQPNVPSGGFNFG 534          
BLAST of CX296551 vs. ExPASy Swiss-Prot
Match: IMA2_ARATH (Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.690e-20
Identity = 50/85 (58.82%), Postives = 58/85 (68.24%), Query Frame = -2
Query:  438 AEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVXXXXXXXXXXXDATQAGFGFAGNGLPVPSGGFNF 692
            AEKN+G+TG  NL+AQ ID+AEGLEKIENLQSHDN +IY+KAVKILET+W             A Q+GF F      VP G FNF
Sbjct:  448 AEKNLGHTGEDNLYAQMIDEAEGLEKIENLQSHDNNDIYDKAVKILETFWTEDNEEEGNDENHAPQSGFQFGSTN--VPPGQFNF 530          
BLAST of CX296551 vs. ExPASy Swiss-Prot
Match: IMA1A_ORYSJ (Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.357e-13
Identity = 35/43 (81.40%), Postives = 39/43 (90.70%), Query Frame = -2
Query:  540 GGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 668
            G VN+F+Q ID+AEGLEKIENLQSHDN EIYEKAVKILE YW+
Sbjct:  452 GDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWM 494          
The following BLAST results are available for this feature:
BLAST of CX296551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
IMA1_ARATH3.444e-2567.82Importin subunit alpha-1 OS=Arabidopsis thaliana G... [more]
IMA_SOLLC1.037e-2161.18Importin subunit alpha OS=Solanum lycopersicum PE=... [more]
IMA1B_ORYSJ3.940e-2163.95Importin subunit alpha-1b OS=Oryza sativa subsp. j... [more]
IMA2_ARATH5.690e-2058.82Importin subunit alpha-2 OS=Arabidopsis thaliana G... [more]
IMA1A_ORYSJ1.357e-1381.40Importin subunit alpha-1a OS=Oryza sativa subsp. j... [more]
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Properties
Property NameValue
Genbank descriptionC05146A06SK FerrChloL1 Citrus clementina cDNA clone C05146A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296551 ID=CX296551; Name=CX296551; organism=Citrus clementina; type=EST; length=693bp
GAGGTGCTTATCTTGGTCAATACAAAATCATGCCAGCACTAAGAAAGAAA
AGAAGAAGAAAACACCTCTAAGAGAACAGAAATATATCTATTTTCTGTCA
TTGCTCTTAGTCATAAACCAGTAAACAGCACAAGTTTAAATCGGCAGCAG
CATGCCCCACTCTTGCTTTCAGGAACTAGGACACTGAAAAAAAAAAGACT
ACTAAAAGAAAACGAAAAGAGACTATACTGTGTAATTTCCCCATCTTTGT
TCACCACTCTTTTACTTGACCCTTGAAAATGACACATTACTCAGCCTATC
TTCAACCAATTTTGAATCTGGACCAAAACTAGATCAAAGAACAGCAAAAG
GAGCCTCCCCCCACATGAAATTGATGATCATAGACACCAGACCTGGACTC
TGAACTTCATTCCACATCCAATTGTTTTCCTTCAACCAAAGTTGAATCCA
CCAGATGGAACAGGAAGTCCATTGCCTGCAAAGCCAAATCCAGCTTGGGT
AGCATCACCTGGGGGTAAAGGCTCGTCTTCATCCTCCTCCACCCAATATG
TCTCAAGAATCTTCACTGCCTTCTCGTATATCTCAGTGTTGTCATGACTC
TGAAGGTTTTCAATCTTTTCCAACCCCTCCGCATCATCAATAGCTTGGGC
AAACAAGTTTACACCACCTGTGTTACCCATATTCTTCTCAGCT
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