CX296608

Overview
NameCX296608
Unique NameCX296608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: AB5F_ARATH (ABC transporter F family member 5 OS=Arabidopsis thaliana GN=ABCF5 PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 6.011e-74
Identity = 134/150 (89.33%), Postives = 142/150 (94.67%), Query Frame = 1
Query:    7 EFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            +FG+ED++LF +ANL+IERGEK AI+GPNGCGKSTLLKLIMGLEKP  GEV+LGEHNVLPNYFEQNQAE LDLDKTVLETV EAAEDWR DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV PSTLLVLDEPTNHLDIPSKE
Sbjct:  431 DFGFEDKMLFKKANLSIERGEKIAILGPNGCGKSTLLKLIMGLEKPVKGEVILGEHNVLPNYFEQNQAEVLDLDKTVLETVCEAAEDWRSDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVTPSTLLVLDEPTNHLDIPSKE 580          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: AB2F_ARATH (ABC transporter F family member 2 OS=Arabidopsis thaliana GN=ABCF2 PE=3 SV=2)

HSP 1 Score: 275.789 bits (704), Expect = 6.011e-74
Identity = 134/149 (89.93%), Postives = 141/149 (94.63%), Query Frame = 1
Query:   10 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            FG++D++LFN+ANL IERGEK AIIGPNGCGKSTLLKLIMGLEKP  GEV+LGEHNVLPNYFEQNQAEA DLDKTV+ETV EAA DWRIDDIK LLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE
Sbjct:  418 FGFDDKMLFNKANLAIERGEKVAIIGPNGCGKSTLLKLIMGLEKPMRGEVILGEHNVLPNYFEQNQAEAQDLDKTVIETVVEAAVDWRIDDIKALLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 566          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: YFMM_BACSU (Uncharacterized ABC transporter ATP-binding protein yfmM OS=Bacillus subtilis GN=yfmM PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 2.168e-23
Identity = 63/148 (42.57%), Postives = 86/148 (58.11%), Query Frame = 1
Query:   13 GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            GY D  L    NL +ERG+K A+ G NG GK+TLLK ++G  +P  G V  GEH +   YFEQ   E  +   T +E V      +   +I+  L +C      ++ +VS+LSGGEKA++  CK +   + LLVLDEPTNHLD  +KE
Sbjct:  334 GY-DSPLSRPLNLRMERGQKIALYGANGIGKTTLLKSLLGEIQPLEGSVERGEH-IYTGYFEQEVKETNN--NTCIEEVWSEFPSYTQYEIRAALAKCGLTTKHIESRVSVLSGGEKAKVRLCKLINSETNLLVLDEPTNHLDADAKE 477          

HSP 2 Score: 67.0106 bits (162), Expect = 4.241e-11
Identity = 52/187 (27.81%), Postives = 87/187 (46.52%), Query Frame = 1
Query:   13 GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV---------LLGEHNVLPN-------------------------YFEQNQAEALDLDKTVLETVAEAAE----------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            G+ DR +FN  +  + +GE   +IG NG GKST + +I G  +P  G+V          L +H VL                           Y +  +A+  +L+K +LE V    +          D ++++I   LG  +     L+R V+ LSGG++ ++   K +++   +L+LDEPTN+LD
Sbjct:   12 GFGDRAIFNNVSFRLLKGEHVGLIGANGEGKSTFMNIITGKLEPDEGKVEWSKNVRVGYLDQHTVLEKGKSIRDVLKDAFHYLFAMEEEMNEIYNKMGEADPDELEK-LLEEVGVIQDALTNNDFYVIDSKVEEIARGLGLSDIG---LERDVTDLSGGQRTKVLLAKLLLEKPEILLLDEPTNYLD 194          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: YDIF_BACSU (Uncharacterized ABC transporter ATP-binding protein ydiF OS=Bacillus subtilis GN=ydiF PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.831e-23
Identity = 62/142 (43.66%), Postives = 83/142 (58.45%), Query Frame = 1
Query:   31 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            L    +  + RGE  A++GPNG GKSTLLK ++   KP  G +  G  NV   Y++Q QAE L   K VL+ + +        +I+  LG   F  D + + V  LSGGEKARLA  K M++ +  L+LDEPTNHLD+ SKE
Sbjct:  342 LLTEVSFMLTRGESAALVGPNGIGKSTLLKTLIDTLKPDQGTISYGS-NVSVGYYDQEQAE-LTSSKRVLDELWDEYPGLPEKEIRTCLGNFLFSGDDVLKPVHSLSGGEKARLALAKLMLQKANFLILDEPTNHLDLDSKE 481          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: UUP1_HAEIN (ABC transporter ATP-binding protein uup-1 OS=Haemophilus influenzae GN=uup-A PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 6.307e-23
Identity = 60/148 (40.54%), Postives = 90/148 (60.81%), Query Frame = 1
Query:   25 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIK----GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            + L    + TI RG+K A++GPNGCGK+T +KL++G  +P  G++  G    +  YF+Q +A+ LD +KTV++ VA+  +D  I+ +K    G L    F        V  LSGGE+ RL   K ++KP+ LL+LDEPTN LD+ + E
Sbjct:  332 KTLLKDFSTTILRGDKIALVGPNGCGKTTFIKLLLGEIQPTSGKIRCGTKLEIA-YFDQYRAD-LDPEKTVMDNVADGKQDIEINGVKRHVLGYLQDFLFPPKRAMTPVKALSGGERNRLLLAKLLLKPNNLLILDEPTNDLDVETLE 477          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: YBIT_ECOLI (Uncharacterized ABC transporter ATP-binding protein ybiT OS=Escherichia coli (strain K12) GN=ybiT PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 8.238e-23
Identity = 58/149 (38.93%), Postives = 89/149 (59.73%), Query Frame = 1
Query:   13 GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD-IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            G+++  LF   NL +E GEK A++G NG GKSTLLK ++G  +P  G V   E N    Y+ Q+     + D TV E +++  ++   +  ++ +LGR  F  D + +   +LSGGEK R+ F K M++   +L++DEPTNHLD+ S E
Sbjct:  328 GFDNGPLFKNLNLLLEVGEKLAVLGTNGVGKSTLLKTLVGDLQPDSGTVKWSE-NARIGYYAQDHEYEFENDLTVFEWMSQWKQEGDDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFGKLMMQKPNILIMDEPTNHLDMESIE 475          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: YBIT_ECOL6 (Uncharacterized ABC transporter ATP-binding protein ybiT OS=Escherichia coli O6 GN=ybiT PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 8.238e-23
Identity = 58/149 (38.93%), Postives = 89/149 (59.73%), Query Frame = 1
Query:   13 GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD-IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            G+++  LF   NL +E GEK A++G NG GKSTLLK ++G  +P  G V   E N    Y+ Q+     + D TV E +++  ++   +  ++ +LGR  F  D + +   +LSGGEK R+ F K M++   +L++DEPTNHLD+ S E
Sbjct:  328 GFDNGPLFKNLNLLLEVGEKLAVLGTNGVGKSTLLKTLVGDLQPDSGTVKWSE-NARIGYYAQDHEYEFENDLTVFEWMSQWKQEGDDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFGKLMMQKPNILIMDEPTNHLDMESIE 475          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: YBIT_ECO57 (Uncharacterized ABC transporter ATP-binding protein ybiT OS=Escherichia coli O157:H7 GN=ybiT PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 8.238e-23
Identity = 58/149 (38.93%), Postives = 89/149 (59.73%), Query Frame = 1
Query:   13 GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD-IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            G+++  LF   NL +E GEK A++G NG GKSTLLK ++G  +P  G V   E N    Y+ Q+     + D TV E +++  ++   +  ++ +LGR  F  D + +   +LSGGEK R+ F K M++   +L++DEPTNHLD+ S E
Sbjct:  328 GFDNGPLFKNLNLLLEVGEKLAVLGTNGVGKSTLLKTLVGDLQPDSGTVKWSE-NARIGYYAQDHEYEFENDLTVFEWMSQWKQEGDDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFGKLMMQKPNILIMDEPTNHLDMESIE 475          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: UUP2_HAEIN (ABC transporter ATP-binding protein uup-2 OS=Haemophilus influenzae GN=uup-B PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.835e-22
Identity = 59/148 (39.86%), Postives = 89/148 (60.14%), Query Frame = 1
Query:   25 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIK----GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            + L    + TI RG+K A++GPNGCGK+T +KL++G  +P  G++  G    +  YF+Q +A+ LD +K V++ VA+  +D  I+ +K    G L    F        V  LSGGE+ RL   K ++KP+ LL+LDEPTN LD+ + E
Sbjct:  144 KTLLKDFSTTILRGDKIALVGPNGCGKTTFIKLLLGEIQPTSGKIRCGTKLEIA-YFDQYRAD-LDPEKIVMDNVADGKQDIEINGVKRHVLGYLQEFLFPPKRAMTPVKALSGGERNRLLLAKLLLKPNNLLILDEPTNDLDVETLE 289          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: UUP_ECOLI (ABC transporter ATP-binding protein uup OS=Escherichia coli (strain K12) GN=uup PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 4.520e-21
Identity = 58/136 (42.65%), Postives = 84/136 (61.76%), Query Frame = 1
Query:   61 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD----IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            RG+K A+IGPNGCGK+TLLKL++G  +   G + +G    +  YF+Q++AE LD DKTV++ +AE  ++  ++     + G L    F        V  LSGGE+ RL   +  +KPS LL+LDEPTN LD+ + E
Sbjct:  344 RGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHVGTKLEVA-YFDQHRAE-LDPDKTVMDNLAEGKQEVMVNGKPRHVLGYLQDFLFHPKRAMTPVRALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLE 477          
The following BLAST results are available for this feature:
BLAST of CX296608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
AB5F_ARATH6.011e-7489.33ABC transporter F family member 5 OS=Arabidopsis t... [more]
AB2F_ARATH6.011e-7489.93ABC transporter F family member 2 OS=Arabidopsis t... [more]
YFMM_BACSU2.168e-2342.57Uncharacterized ABC transporter ATP-binding protei... [more]
YDIF_BACSU2.831e-2343.66Uncharacterized ABC transporter ATP-binding protei... [more]
UUP1_HAEIN6.307e-2340.54ABC transporter ATP-binding protein uup-1 OS=Haemo... [more]
YBIT_ECOLI8.238e-2338.93Uncharacterized ABC transporter ATP-binding protei... [more]
YBIT_ECOL68.238e-2338.93Uncharacterized ABC transporter ATP-binding protei... [more]
YBIT_ECO578.238e-2338.93Uncharacterized ABC transporter ATP-binding protei... [more]
UUP2_HAEIN1.835e-2239.86ABC transporter ATP-binding protein uup-2 OS=Haemo... [more]
UUP_ECOLI4.520e-2142.65ABC transporter ATP-binding protein uup OS=Escheri... [more]

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Properties
Property NameValue
Genbank descriptionC05146G08SK FerrChloL1 Citrus clementina cDNA clone C05146G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296608 ID=CX296608; Name=CX296608; organism=Citrus clementina; type=EST; length=457bp
CGAGGGGAATTTGGATACGAGGATAGACTTCTGTTTAATCGAGCAAATCT
CACAATTGAAAGGGGAGAGAAAACTGCCATCATTGGCCCAAATGGTTGTG
GTAAGAGTACTTTGCTGAAATTGATAATGGGTTTAGAGAAGCCAAGAGGA
GGTGAAGTTCTGCTTGGTGAGCATAATGTCCTACCAAACTATTTTGAGCA
GAATCAGGCTGAGGCACTTGATTTGGACAAAACAGTACTTGAGACAGTAG
CAGAAGCTGCAGAGGACTGGAGAATTGATGATATAAAGGGCCTCCTTGGT
CGTTGTAATTTCAAAGCTGACATGCTTGATAGAAAGGTTTCCCTTTTGAG
TGGTGGTGAGAAGGCACGTCTTGCATTTTGCAAATTCATGGTAAAACCAT
CAACTCTTCTAGTTTTGGATGAACCAACTAATCACTTGGATATTCCTTCA
AAAGAGA
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