CX296693
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1) HSP 1 Score: 390.193 bits (1001), Expect = 4.903e-108 Identity = 197/213 (92.49%), Postives = 207/213 (97.18%), Query Frame = 2 Query: 8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646 TIQILKGLRERYEIHHKLRYTDE LV+AAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEA+ELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQI+AL+DK KE+SKAE+EA D GP+VTE DIQHIVS+WTGIPVEKVSTDESDRLLKMEETLH R+IGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKS+ Sbjct: 439 TIQILKGLRERYEIHHKLRYTDEDLVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEAKELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQITALIDKNKEVSKAESEAADTGPLVTEADIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHTRIIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSE 651
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1) HSP 1 Score: 384.415 bits (986), Expect = 2.691e-106 Identity = 197/214 (92.06%), Postives = 206/214 (96.26%), Query Frame = 2 Query: 8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGD-VGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646 TIQILKGLRERYEIHHKL YTDEA+ +AA+LS+QYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISAL+DK KE SKAE+EAGD GP+VTE DIQHIVS+WTGIPVEKVSTDESDRLLKMEETLH RVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKS+ Sbjct: 441 TIQILKGLRERYEIHHKLHYTDEAIEAAAKLSHQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALIDKNKEKSKAESEAGDAAGPIVTEADIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHTRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSE 654
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 377.867 bits (969), Expect = 2.518e-104 Identity = 187/213 (87.79%), Postives = 205/213 (96.24%), Query Frame = 2 Query: 8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646 TIQILKGLRERYEIHHKLRYTDEAL++AAQLSYQYISDRFLPDKAIDL+DEAGSRVRL+HAQLPEEA+EL+KE+R+I KEK E VR QDFEKAGELRD+EMDLKAQISAL++KGKEMSKAETE D GP+VTEVDIQHIVS+WTGIPV+KVS DESDRLLKME+TLHKR+IGQDEAV+AISRAIRRARVGLKNPNRPIASFIFSGPTGVGKS+ Sbjct: 439 TIQILKGLRERYEIHHKLRYTDEALIAAAQLSYQYISDRFLPDKAIDLVDEAGSRVRLQHAQLPEEAKELDKEVRKIVKEKEEYVRNQDFEKAGELRDKEMDLKAQISALIEKGKEMSKAETETADEGPIVTEVDIQHIVSSWTGIPVDKVSADESDRLLKMEDTLHKRIIGQDEAVQAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSE 651
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1) HSP 1 Score: 366.696 bits (940), Expect = 5.806e-101 Identity = 188/213 (88.26%), Postives = 203/213 (95.31%), Query Frame = 2 Query: 8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646 TIQILKGLRERYEIHHKLRYTDE+LV+AAQLSYQYISDRFLPD+AIDL+DEAGSRVRLRHAQ+PEEARELEKELRQITKE NEAVRGQDFEKAG LRDRE++L+A++SA+ KGKEMSKAE+E GD GP+VTE DIQHIVS+WTGI VEKVSTDESD LLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIF GPTGVGKS+ Sbjct: 388 TIQILKGLRERYEIHHKLRYTDESLVAAAQLSYQYISDRFLPDRAIDLMDEAGSRVRLRHAQVPEEARELEKELRQITKE-NEAVRGQDFEKAGTLRDREIELRAEVSAIQAKGKEMSKAESETGDEGPMVTESDIQHIVSSWTGILVEKVSTDESDLLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFFGPTGVGKSE 599
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1) HSP 1 Score: 282.337 bits (721), Expect = 1.440e-75 Identity = 148/215 (68.84%), Postives = 178/215 (82.79%), Query Frame = 2 Query: 8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALV--DKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646 TI+IL GLR+RYE HHKL +DEAL +AA+ + QYI+DRFLPDKAIDLIDEAGSRVRL ++QLP AREL+KELR+I K+K+EAVR QDFE AG+LRDREM++KAQI+A+ KG E + E VVTE DI IV+AWTGIPV K++ ES++LL+MEETLH R+IGQDEAV A+S+AIRRARVGLKNPNRPIASFIFSGPTGVGK++ Sbjct: 346 TIEILYGLRDRYEKHHKLVISDEALSAAAKFADQYIADRFLPDKAIDLIDEAGSRVRLMNSQLPPAARELDKELREILKQKDEAVRSQDFETAGQLRDREMEIKAQIAAIAHSKKGDEENTKEVS------VVTEEDIAQIVAAWTGIPVNKMTRSESEKLLQMEETLHGRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFIFSGPTGVGKTE 554
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1) HSP 1 Score: 267.314 bits (682), Expect = 4.793e-71 Identity = 139/213 (65.26%), Postives = 171/213 (80.28%), Query Frame = 2 Query: 8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646 TI+IL GLR+RYE HH+L +D AL +AA+ + QYISDRFLPDKAIDLIDEAGSRVRL ++QLP AREL+KELR + K K+EA+R Q +E A + R REM++KAQI+A+ + K E + PVVTE DI IV+AWTGIPV K++ ES++L++MEETLH R+IGQDEAV A+SRAIRRARVGLKNPNRPIASFIFSGPTGVGK++ Sbjct: 349 TIEILFGLRDRYEKHHQLTMSDGALAAAAKYANQYISDRFLPDKAIDLIDEAGSRVRLLNSQLPPAARELDKELRAVLKTKDEAIRAQKYETAEQYRAREMEIKAQIAAIA----QSKKNEPDLNLEDPVVTEDDIAEIVAAWTGIPVTKLTKSESEKLMQMEETLHGRIIGQDEAVIAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTE 557
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1) HSP 1 Score: 266.929 bits (681), Expect = 6.260e-71 Identity = 139/213 (65.26%), Postives = 170/213 (79.81%), Query Frame = 2 Query: 8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646 TI+IL GLR+RYE HH+L +D AL +AA+ + QYISDRFLPDKAIDLIDEAGSRVRL ++QLP AREL+KELR + K K+EA+R Q +E A + R REM++KAQI+A+ + K E + PVVTE DI IV+AWTGIPV K++ ES++L+ MEETLH R+IGQDEAV A+SRAIRRARVGLKNPNRPIASFIFSGPTGVGK++ Sbjct: 349 TIEILFGLRDRYEKHHQLTMSDGALAAAAKYANQYISDRFLPDKAIDLIDEAGSRVRLLNSQLPPAARELDKELRAVLKTKDEAIRAQKYETAEQYRAREMEIKAQIAAIA----QSKKNEPDLNLEDPVVTEDDIAEIVAAWTGIPVTKLTKSESEKLMHMEETLHGRIIGQDEAVVAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTE 557
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1) HSP 1 Score: 262.307 bits (669), Expect = 1.542e-69 Identity = 131/213 (61.50%), Postives = 171/213 (80.28%), Query Frame = 2 Query: 8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646 TI+IL+GLR+RYE HH+L+ +D A+V+AA+LS QYI+DRFLPDKAIDL+DEA SRVRL + +LP A L++ELR I K KNE +R DFE+A + R+RE+++K Q++AL+ KE + E P+V E DI +IVS+WTGIPV K++ ES++LL MEETLH R++GQ+EAV A+S+AIRRARVGLKNPNRPIASFIFSGPTGVGK++ Sbjct: 377 TIEILRGLRDRYEAHHRLKISDSAIVAAAKLSDQYIADRFLPDKAIDLVDEASSRVRLMNYKLPPSAEYLDEELRHIQKIKNELIRSGDFEEASQFREREIEVKVQMAALMKAKKEAIEEELALNP--PIVNEDDIANIVSSWTGIPVSKLTKSESEKLLHMEETLHSRIVGQNEAVIAVSKAIRRARVGLKNPNRPIASFIFSGPTGVGKTE 587
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB_OCEIH (Chaperone protein clpB OS=Oceanobacillus iheyensis GN=clpB PE=3 SV=1) HSP 1 Score: 238.039 bits (606), Expect = 3.114e-62 Identity = 121/213 (56.81%), Postives = 156/213 (73.24%), Query Frame = 2 Query: 8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646 TIQIL GLR+RYE HH++ TDEA+ +AA LS +YI+DRFLPDKAIDLIDEAGS+VRLR +P +ELE++L ++ KEK+ AV+ Q+FEKA LRD E + ++ ++ KE + G VT DI +VS WTG+PV K++ DE+DRLL ME+ LH RVIGQ EAV A+++AIRRAR GLK+P RPI SFIF GPTGVGK++ Sbjct: 350 TIQILNGLRDRYEAHHRVTITDEAIEAAASLSDRYITDRFLPDKAIDLIDEAGSKVRLRSYTVPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDSEQRFREELETTKNQWKE------KQGQTDSEVTMEDIAAVVSTWTGVPVSKLTKDETDRLLNMEKILHDRVIGQSEAVNAVAKAIRRARAGLKDPKRPIGSFIFLGPTGVGKTE 556
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_BACSU (Negative regulator of genetic competence clpC/mecB OS=Bacillus subtilis GN=clpC PE=1 SV=1) HSP 1 Score: 233.802 bits (595), Expect = 5.873e-61 Identity = 119/213 (55.87%), Postives = 155/213 (72.77%), Query Frame = 2 Query: 8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646 +IQIL+GLR+RYE HH++ TD+A+ +A +LS +YISDRFLPDKAIDLIDEAGS+VRLR P +ELE++L ++ KEK+ AV+ Q+FEKA LRD E L+ Q+ KE + G VT DI +VS+WTG+PV K++ E+D+LL ME LH RVIGQDEAV A+++A+RRAR GLK+P RPI SFIF GPTGVGK++ Sbjct: 347 SIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKE------KQGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTE 553 The following BLAST results are available for this feature:
BLAST of CX296693 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 195
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296693 ID=CX296693; Name=CX296693; organism=Citrus clementina; type=EST; length=648bpback to top |