CX296701
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1) HSP 1 Score: 270.396 bits (690), Expect = 3.614e-76 Identity = 120/151 (79.47%), Postives = 136/151 (90.07%), Query Frame = 1 Query: 139 KSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPGV 591 KS+ AFP TKK NND +S+ SNGGRVQCMKVWPP GLKK+ETLSYLPPLSDEAL KEI YL+R+ WIPCLEFELE G+VYREHH SPGYYDGRYWTMWKLPM+GCTD+ QV+KEVGE +KEYP++F+R+IGFDN RQVQCISF+ AKPPGV Sbjct: 30 KSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKPPGV 180 HSP 2 Score: 34.6538 bits (78), Expect = 3.614e-76 Identity = 15/25 (60.00%), Postives = 19/25 (76.00%), Query Frame = 2 Query: 62 ISSTTVATANRASLAQASMVAPFTG 136 ISS+ +AT NR + QAS+ APFTG Sbjct: 4 ISSSAIATVNRTTSTQASLAAPFTG 28
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1) HSP 1 Score: 258.455 bits (659), Expect = 6.712e-75 Identity = 119/151 (78.81%), Postives = 133/151 (88.08%), Query Frame = 1 Query: 139 KSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPGV 591 KS+SAFP T+KTNNDITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR IPCLEFELE G+VYREH+ SPGYYDGRYWTMWKLPM+GC D++QVLKE+ E +K YP +F+RIIGFDNKRQVQ ISF+A KPPGV Sbjct: 32 KSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKPPGV 182 HSP 2 Score: 42.3578 bits (98), Expect = 6.712e-75 Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 2 Query: 47 MASSMISSTTVATANRASLAQASMVAPFT 133 MA SMISS TVA +RAS AQ+SMVAPFT Sbjct: 1 MACSMISSATVAAVSRASPAQSSMVAPFT 29
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1) HSP 1 Score: 252.292 bits (643), Expect = 1.489e-74 Identity = 115/149 (77.18%), Postives = 131/149 (87.92%), Query Frame = 1 Query: 139 KSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 585 KS++AFPAT+K+NNDITS+ASNGGRVQCMKVWPP GL+KFETLSYLPPLS E+L K+I YL+ GWIPCLEFELE +VYRE++ SPGYYDGRYW MWKLPM+GCTDATQVL E+ E K YP S +RIIGFDNKRQVQCISF+A KPP Sbjct: 32 KSTAAFPATRKSNNDITSLASNGGRVQCMKVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPTSHIRIIGFDNKRQVQCISFIAYKPP 180 HSP 2 Score: 47.3654 bits (111), Expect = 1.489e-74 Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 2 Query: 47 MASSMISSTTVATANRASLAQASMVAPFTG 136 MASSMISS TVAT +RA+ AQA+MVAPFTG Sbjct: 1 MASSMISSATVATVSRATPAQATMVAPFTG 30
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1) HSP 1 Score: 252.292 bits (643), Expect = 5.135e-72 Identity = 112/148 (75.68%), Postives = 130/148 (87.84%), Query Frame = 1 Query: 139 KSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 582 KSS+ FP TKKTNNDITSIASNGGRV CM+VWPP G KKFETLSYLPPL++E L KE+ YL+R GWIPCLEFELEKG+VYRE+H SPGYYDGRYWTMW+LP++G TD++QVLKE+ + + EYP SF+RIIGFDN RQVQCISF+A P Sbjct: 30 KSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTP 177 HSP 2 Score: 38.891 bits (89), Expect = 5.135e-72 Identity = 18/27 (66.67%), Postives = 22/27 (81.48%), Query Frame = 2 Query: 56 SMISSTTVATANRASLAQASMVAPFTG 136 ++ISS V T NRAS AQA++VAPFTG Sbjct: 2 ALISSAAVTTVNRASSAQANLVAPFTG 28
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1) HSP 1 Score: 249.21 bits (635), Expect = 2.527e-71 Identity = 112/151 (74.17%), Postives = 132/151 (87.42%), Query Frame = 1 Query: 139 KSSSAFPATKKTNN-DITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 588 KS+++FP TKK NN DITS+ASNGGRV+CM+VWPP +KK+ETLSYLP LSDE LLKE+ YLL++GW+PCLEFE E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G Sbjct: 30 KSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180 HSP 2 Score: 39.6614 bits (91), Expect = 2.527e-71 Identity = 21/30 (70.00%), Postives = 26/30 (86.67%), Query Frame = 2 Query: 47 MASSMISSTTVATANRASLAQASMVAPFTG 136 MASS++SS VAT R+++AQASMVAPFTG Sbjct: 1 MASSIVSSAAVAT--RSNVAQASMVAPFTG 28
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS3B_ARATH (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2) HSP 1 Score: 253.447 bits (646), Expect = 4.297e-71 Identity = 115/149 (77.18%), Postives = 130/149 (87.25%), Query Frame = 1 Query: 139 KSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 585 KSS+AFP T+KTN DITSIASNGGRV CMKVWPP G KKFETLSYLP LSD L KE+ YLLR+ WIPC+EFELE G+VYREH ++PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP +F+RIIGFDN RQVQCISF+A KPP Sbjct: 28 KSSAAFPVTRKTNKDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176 HSP 2 Score: 34.6538 bits (78), Expect = 4.297e-71 Identity = 20/30 (66.67%), Postives = 22/30 (73.33%), Query Frame = 2 Query: 47 MASSMISSTTVATANRASLAQASMVAPFTG 136 MASSM+SS V T S AQA+MVAPFTG Sbjct: 1 MASSMLSSAAVVT----SPAQATMVAPFTG 26
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS1A_ARATH (Ribulose bisphosphate carboxylase small chain 1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A PE=1 SV=2) HSP 1 Score: 254.603 bits (649), Expect = 5.605e-71 Identity = 114/154 (74.03%), Postives = 133/154 (86.36%), Query Frame = 1 Query: 124 PLHRPKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 585 P + KSS+AFPAT+K NNDITSI SNGGRV CM+VWPP G KKFETLSYLP L+D L KE+ YL+R+ WIPC+EFELE G+VYREH +SPGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++F+RIIGFDN RQVQCISF+A KPP Sbjct: 23 PFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPP 176 HSP 2 Score: 33.113 bits (74), Expect = 5.605e-71 Identity = 19/30 (63.33%), Postives = 22/30 (73.33%), Query Frame = 2 Query: 47 MASSMISSTTVATANRASLAQASMVAPFTG 136 MASSM+SS T+ AS AQA+MVAPF G Sbjct: 1 MASSMLSSATMV----ASPAQATMVAPFNG 26
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1) HSP 1 Score: 249.21 bits (635), Expect = 7.309e-71 Identity = 113/150 (75.33%), Postives = 129/150 (86.00%), Query Frame = 1 Query: 139 KSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 588 KS+++FP ++K N DITSIASNGGRVQCM+VWPP KK+ETLSYLP LS E LL EI YLL+SGW+PCLEFE E+G+VYREHH SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISF+A KP G Sbjct: 30 KSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEIEYLLKSGWVPCLEFETERGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179 HSP 2 Score: 38.1206 bits (87), Expect = 7.309e-71 Identity = 20/30 (66.67%), Postives = 26/30 (86.67%), Query Frame = 2 Query: 47 MASSMISSTTVATANRASLAQASMVAPFTG 136 MASS++SS VAT R+++AQA+MVAPFTG Sbjct: 1 MASSVLSSAAVAT--RSNVAQANMVAPFTG 28
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS_RAPSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Raphanus sativus GN=RBCS PE=2 SV=1) HSP 1 Score: 253.832 bits (647), Expect = 9.532e-71 Identity = 115/149 (77.18%), Postives = 130/149 (87.25%), Query Frame = 1 Query: 139 KSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 585 KSS+AFP T+KTN DITSIASNGGRV CMKVWPP G KKFETLSYLP LSD L KE+ YLLR+ WIPC+EFELE G+VYREH S+PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++ +RIIGFDN RQVQCISF+A KPP Sbjct: 28 KSSAAFPVTRKTNTDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNALIRIIGFDNNRQVQCISFIAYKPP 176 HSP 2 Score: 33.113 bits (74), Expect = 9.532e-71 Identity = 19/30 (63.33%), Postives = 21/30 (70.00%), Query Frame = 2 Query: 47 MASSMISSTTVATANRASLAQASMVAPFTG 136 MASSM+SS V T S QA+MVAPFTG Sbjct: 1 MASSMLSSAAVVT----SQLQATMVAPFTG 26
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS2B_ARATH (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B PE=2 SV=2) HSP 1 Score: 251.136 bits (640), Expect = 9.532e-71 Identity = 113/149 (75.84%), Postives = 129/149 (86.58%), Query Frame = 1 Query: 139 KSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 585 KSS++FP T+K NNDITSI SNGGRV CMKVWPP G KKFETLSYLP LSD L KE+ YLLR+ WIPC+EFELE G+VYREH ++PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP +F+RIIGFDN RQVQCISF+A KPP Sbjct: 28 KSSASFPVTRKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176 HSP 2 Score: 35.8094 bits (81), Expect = 9.532e-71 Identity = 21/30 (70.00%), Postives = 22/30 (73.33%), Query Frame = 2 Query: 47 MASSMISSTTVATANRASLAQASMVAPFTG 136 MASSM SST V T S AQA+MVAPFTG Sbjct: 1 MASSMFSSTAVVT----SPAQATMVAPFTG 26 The following BLAST results are available for this feature:
BLAST of CX296701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 127
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296701 ID=CX296701; Name=CX296701; organism=Citrus clementina; type=EST; length=729bpback to top |