CX297675

Overview
NameCX297675
Unique NameCX297675
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length484
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297675 vs. ExPASy Swiss-Prot
Match: AMYB_HORVU (Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.457e-26
Identity = 53/97 (54.64%), Postives = 71/97 (73.20%), Query Frame = 1
Query:   58 KGKGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVS 348
            KG  V V+VM+PLD+V+++N   +   + A LR L  AGV+GVM+DVWWGLVE   P  Y+W  Y  L E+ ++ GLK+QA+MSFHQCGGNVGD+V+
Sbjct:    6 KGNYVQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWSAYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVN 102          
BLAST of CX297675 vs. ExPASy Swiss-Prot
Match: AMYB_HORSP (Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.457e-26
Identity = 53/97 (54.64%), Postives = 71/97 (73.20%), Query Frame = 1
Query:   58 KGKGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVS 348
            KG  V V+VM+PLD+V+++N   +   + A LR L  AGV+GVM+DVWWGLVE   P  Y+W  Y  L E+ ++ GLK+QA+MSFHQCGGNVGD+V+
Sbjct:    6 KGNYVQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWSAYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVN 102          
BLAST of CX297675 vs. ExPASy Swiss-Prot
Match: AMYB_MAIZE (Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.923e-24
Identity = 48/93 (51.61%), Postives = 66/93 (70.97%), Query Frame = 1
Query:   70 VPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVS 348
            V V+VM+PLD +T+ NT  ++    A L+ L  AG +GVM+DVWWGLVE  +PG Y+W  Y  + ++ +  GLK+QA+MS HQCGGNVGD V+
Sbjct:   10 VQVYVMLPLDVITVDNTFEKEDETRAQLKKLTEAGADGVMIDVWWGLVEGKEPGVYDWSAYRQVFKLVQEAGLKLQAIMSCHQCGGNVGDVVN 102          
BLAST of CX297675 vs. ExPASy Swiss-Prot
Match: AMYB_IPOBA (Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4)

HSP 1 Score: 109.768 bits (273), Expect = 6.692e-24
Identity = 46/100 (46.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query:   46 GLQEKGKGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSV 345
            G+   G  V ++VM+PL  V   N    K+ ++  L+ +K+ G +GVM+DVWWG++E   P  Y+W  Y +L ++ K+ GLK+QA+MSFHQCGGNVGD+V
Sbjct:    6 GVMPIGNYVSLYVMLPLGVVNADNVFPDKEKVEDELKQVKAGGCDGVMVDVWWGIIEAKGPKQYDWSAYRELFQLVKKCGLKIQAIMSFHQCGGNVGDAV 105          
BLAST of CX297675 vs. ExPASy Swiss-Prot
Match: AMYB_VIGUN (Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.491e-23
Identity = 46/93 (49.46%), Postives = 66/93 (70.97%), Query Frame = 1
Query:   70 VPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVS 348
            VPV+VM+PL  V+++N     + +   L  L+ AGV+GVM+DVWWG++E+  P  Y+W  Y  L ++ +  GLK+QA+MSFHQCGGNVGD V+
Sbjct:   13 VPVYVMLPLGVVSVNNVFEDPEGLKEQLVQLREAGVDGVMVDVWWGIIEQKGPKQYDWSAYKSLFQLVQECGLKLQAIMSFHQCGGNVGDVVN 105          
BLAST of CX297675 vs. ExPASy Swiss-Prot
Match: AMYB_WHEAT (Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.947e-23
Identity = 49/93 (52.69%), Postives = 64/93 (68.82%), Query Frame = 1
Query:   70 VPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVS 348
            V V+VM+PLD V++ N   +   I A L+ L  AGV+GVM+DVWWGLVE   P  Y+W  Y  + ++    GLK+QA+MSFHQCGGNVGD V+
Sbjct:   10 VQVYVMLPLDVVSVDNKFEKGDEIRAQLKKLTEAGVDGVMIDVWWGLVEGKGPKAYDWSAYKQVFDLVHEAGLKLQAIMSFHQCGGNVGDVVN 102          
BLAST of CX297675 vs. ExPASy Swiss-Prot
Match: AMYB_MEDSA (Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.947e-23
Identity = 45/93 (48.39%), Postives = 66/93 (70.97%), Query Frame = 1
Query:   70 VPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVS 348
            VPV+VM+PL  + ++N       +   L  L++AGV+GVM+DVWWG++E+  P  Y+W  Y  L ++ ++ GLK+QA+MSFHQCGGNVGD V+
Sbjct:   13 VPVYVMLPLGVINVNNVFEDPDGLKEQLVQLRAAGVDGVMIDVWWGIIEQKGPKEYDWSAYKSLFQLVQKCGLKLQAIMSFHQCGGNVGDVVN 105          
BLAST of CX297675 vs. ExPASy Swiss-Prot
Match: AMYB_TRIRP (Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.321e-23
Identity = 45/93 (48.39%), Postives = 65/93 (69.89%), Query Frame = 1
Query:   70 VPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVS 348
            VPV+VM+PL  + ++N       +   L  L++AGV+GVM+DVWWG++E+  P  Y+W  Y  L ++ +  GLK+QA+MSFHQCGGNVGD V+
Sbjct:   13 VPVYVMLPLGVINVNNVFEDPDGLKEQLVQLRAAGVDGVMVDVWWGIIEQKGPKEYDWSAYKSLFQLVQECGLKLQAIMSFHQCGGNVGDVVT 105          
BLAST of CX297675 vs. ExPASy Swiss-Prot
Match: AMYB_ARATH (Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.665e-23
Identity = 48/94 (51.06%), Postives = 65/94 (69.15%), Query Frame = 1
Query:   70 VPVFVMMPLDSVTMSNTVNRKKAIDASLRALKS-AGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVS 348
            VPV+VM+PL  V + N     + ++  L+ LK  AGV+GVM+DVWWG++E   P  Y+W  Y  L ++  R GLK+QA+MSFHQCGGNVGD V+
Sbjct:   14 VPVYVMLPLGVVNVENVFADPETLETQLKRLKEEAGVDGVMVDVWWGIIESKGPKQYDWTAYKTLFQLIARLGLKIQAIMSFHQCGGNVGDIVT 107          
BLAST of CX297675 vs. ExPASy Swiss-Prot
Match: AMYB_SOYBN (Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 6.263e-22
Identity = 45/93 (48.39%), Postives = 62/93 (66.67%), Query Frame = 1
Query:   70 VPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVS 348
            VPV+VM+PL  V + N       +   L  L++AGV+GVM+DVWWG++E   P  Y+W  Y  L ++ +  GL +QA+MSFHQCGGNVGD V+
Sbjct:   13 VPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWRAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVN 105          
The following BLAST results are available for this feature:
BLAST of CX297675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
AMYB_HORVU2.457e-2654.64Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1[more]
AMYB_HORSP2.457e-2654.64Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV... [more]
AMYB_MAIZE3.923e-2451.61Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1[more]
AMYB_IPOBA6.692e-2446.00Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4[more]
AMYB_VIGUN1.491e-2349.46Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=... [more]
AMYB_WHEAT1.947e-2352.69Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=... [more]
AMYB_MEDSA1.947e-2348.39Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1[more]
AMYB_TRIRP3.321e-2348.39Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1[more]
AMYB_ARATH5.665e-2351.06Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 ... [more]
AMYB_SOYBN6.263e-2248.39Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06004A09SK RindPdig24 Citrus clementina cDNA clone C06004A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297675 ID=CX297675; Name=CX297675; organism=Citrus clementina; type=EST; length=484bp
GATTCGGCCGAGGAGGAGGTTGGCGGCGAGATGTACAAGCAGGGCGGCTT
GCAAGAAAAGGGGAAGGGAGTGCCGGTGTTCGTGATGATGCCGCTGGACA
GCGTGACGATGTCGAATACTGTGAATAGAAAGAAGGCGATCGACGCGAGT
CTCAGGGCGTTGAAGAGCGCGGGAGTGGAAGGAGTTATGATGGACGTGTG
GTGGGGCCTGGTCGAGAGGGACCAGCCCGGCCATTACAATTGGGGTGGCT
ATTCTGACTTGCTCGAAATGGCCAAACGACACGGCCTCAAGGTTCAGGCC
GTCATGTCGTTTCACCAGTGCGGCGGCAACGTCGGTGATTCCGTCTCGTA
CGTATTACTATAAATTTACTTTTTTTTTTTTCAATTTCATCCATTGTTCC
ATACTAGTTTAGCTAATGTGCGTAACACGCCTCTAGAAGAGCGCGTGATT
TTAATTTGCTTCAAAAAAAAAAAAAAAAAAAAAA
back to top