CX297914

Overview
NameCX297914
Unique NameCX297914
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length470
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14845 contig Ccv1_Contig14845:774..1243. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297914 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.442e-20
Identity = 48/57 (84.21%), Postives = 54/57 (94.74%), Query Frame = 3
Query:   24 SQVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 194
            ++VVYDR+SGRSRGFGFVTYSSAEEV+NAI+SL+GVDL GRAIRVS AEARP RRQF
Sbjct:  217 AKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 273          
BLAST of CX297914 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.442e-20
Identity = 48/57 (84.21%), Postives = 54/57 (94.74%), Query Frame = 3
Query:   24 SQVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 194
            ++VVYDR+SGRSRGFGFVTYSSAEEV+NAI+SL+GVDL GRAIRVS AEARP RRQF
Sbjct:  223 AKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 279          
BLAST of CX297914 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.652e-18
Identity = 45/57 (78.95%), Postives = 53/57 (92.98%), Query Frame = 3
Query:   24 SQVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 194
            ++VVYDR+SGRSRGFGFVTYSSA+EV++AIDSLNG+DL GR+IRVS AE RP RRQF
Sbjct:  237 AKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERP-RRQF 292          
BLAST of CX297914 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.135e-17
Identity = 45/57 (78.95%), Postives = 53/57 (92.98%), Query Frame = 3
Query:   24 SQVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 194
            ++VVYDR+SGRSRGFGFVTYSS++EV++AIDSLNGVDL GR+IRVS AE RP RRQF
Sbjct:  236 AKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERP-RRQF 291          
BLAST of CX297914 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.639e-16
Identity = 40/57 (70.18%), Postives = 49/57 (85.96%), Query Frame = 3
Query:   24 SQVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 194
            ++V+YDR+SGRS+GFGFVTY S++EV NAI SL+G DL GR IRVS AEARP RRQ+
Sbjct:  233 ARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289          
BLAST of CX297914 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.062e-15
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = 3
Query:   24 SQVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 194
            ++V+YDR+SGRS+GFGFVT SS++EV  AI+SLNG DL GR IRVS AEARP R QF
Sbjct:  286 ARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPRGQF 342          
BLAST of CX297914 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.298e-13
Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = 3
Query:   24 SQVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 194
            ++VVYDRE+GRSRGFGFVT S  +E++ AI +L+G +L GRAIRV+VAE RP RR +
Sbjct:  273 ARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRRGY 329          
BLAST of CX297914 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.455e-12
Identity = 35/54 (64.81%), Postives = 45/54 (83.33%), Query Frame = 3
Query:   24 SQVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQR 185
            ++VV DRE+GRSRGFGFVT SS  EV++AI +L+G  L GRA+RV+VAE RP+R
Sbjct:  178 ARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERPRR 231          
BLAST of CX297914 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.215e-11
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 3
Query:   24 SQVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 194
            ++VV+DRESGRSRGFGFVT SS  E+  AI +L+G  L GR IRV+ AE RP+R  +
Sbjct:  220 ARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERPRRNTY 276          
BLAST of CX297914 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.073e-11
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 3
Query:   24 SQVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 194
            ++VVYDRE+GRSRGFGFVT +S  E+ +AI +L+G  L GR IRV+VAE R +R  F
Sbjct:  259 ARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSRRNTF 315          
The following BLAST results are available for this feature:
BLAST of CX297914 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
ROC1_NICSY5.442e-2084.2129 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC1_NICPL5.442e-2084.2130 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC2_NICPL6.652e-1878.9531 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC2_NICSY1.135e-1778.9529 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
ROC1_ARATH1.639e-1670.18Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
ROC2_ARATH1.062e-1570.1829 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC3_ARATH1.298e-1363.1631 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC1_SPIOL5.455e-1264.8128 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
ROC3_NICSY1.215e-1159.6528 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC4_NICSY2.073e-1159.6531 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]

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Properties
Property NameValue
Genbank descriptionC06006E12SK RindPdig24 Citrus clementina cDNA clone C06006E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297914 ID=CX297914; Name=CX297914; organism=Citrus clementina; type=EST; length=470bp
GATTCGGCCGAGGAGGTTTTGGAAGCCAAGTGGTATATGACAGGGAGAGT
GGTAGATCGCGGGGTTTCGGGTTTGTGACTTACAGTTCTGCTGAAGAGGT
TGACAATGCAATTGATTCCTTGAATGGTGTAGATTTGGCCGGTAGAGCAA
TTCGAGTCTCGGTGGCTGAAGCAAGGCCACAAAGGCGTCAATTTTGAGCT
GTGGCAGAAACTAGTTTTCAGTTGTTTTGATTTTATCGTTAGTTATTTGT
GTTGTTATAAGGCTGCTTATCAGTGCTATCAAATCATCGGCTTCAAAGAC
AGATTCATGATTATTTGTTTTTGCATATGCGAAATGCATGTTGCCTTGTT
ATAATTTCTAACTATCATCATGAGCCACAGAAATTTTGGAGCTGCATTAT
TCAGAACAGGATCCTTGCATCTGGCATTTTGATAATTCCATCTCTGTGAC
GCTTGCCAGATGAAAAAAAA
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