CX297914
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX297914 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 5.442e-20 Identity = 48/57 (84.21%), Postives = 54/57 (94.74%), Query Frame = 3 Query: 24 SQVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 194 ++VVYDR+SGRSRGFGFVTYSSAEEV+NAI+SL+GVDL GRAIRVS AEARP RRQF Sbjct: 217 AKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 273
BLAST of CX297914 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 5.442e-20 Identity = 48/57 (84.21%), Postives = 54/57 (94.74%), Query Frame = 3 Query: 24 SQVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 194 ++VVYDR+SGRSRGFGFVTYSSAEEV+NAI+SL+GVDL GRAIRVS AEARP RRQF Sbjct: 223 AKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 279
BLAST of CX297914 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 6.652e-18 Identity = 45/57 (78.95%), Postives = 53/57 (92.98%), Query Frame = 3 Query: 24 SQVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 194 ++VVYDR+SGRSRGFGFVTYSSA+EV++AIDSLNG+DL GR+IRVS AE RP RRQF Sbjct: 237 AKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERP-RRQF 292
BLAST of CX297914 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.135e-17 Identity = 45/57 (78.95%), Postives = 53/57 (92.98%), Query Frame = 3 Query: 24 SQVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 194 ++VVYDR+SGRSRGFGFVTYSS++EV++AIDSLNGVDL GR+IRVS AE RP RRQF Sbjct: 236 AKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERP-RRQF 291
BLAST of CX297914 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 1.639e-16 Identity = 40/57 (70.18%), Postives = 49/57 (85.96%), Query Frame = 3 Query: 24 SQVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 194 ++V+YDR+SGRS+GFGFVTY S++EV NAI SL+G DL GR IRVS AEARP RRQ+ Sbjct: 233 ARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289
BLAST of CX297914 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2) HSP 1 Score: 82.4185 bits (202), Expect = 1.062e-15 Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = 3 Query: 24 SQVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 194 ++V+YDR+SGRS+GFGFVT SS++EV AI+SLNG DL GR IRVS AEARP R QF Sbjct: 286 ARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPRGQF 342
BLAST of CX297914 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.298e-13 Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = 3 Query: 24 SQVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 194 ++VVYDRE+GRSRGFGFVT S +E++ AI +L+G +L GRAIRV+VAE RP RR + Sbjct: 273 ARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRRGY 329
BLAST of CX297914 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 5.455e-12 Identity = 35/54 (64.81%), Postives = 45/54 (83.33%), Query Frame = 3 Query: 24 SQVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQR 185 ++VV DRE+GRSRGFGFVT SS EV++AI +L+G L GRA+RV+VAE RP+R Sbjct: 178 ARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERPRR 231
BLAST of CX297914 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.215e-11 Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 3 Query: 24 SQVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 194 ++VV+DRESGRSRGFGFVT SS E+ AI +L+G L GR IRV+ AE RP+R + Sbjct: 220 ARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERPRRNTY 276
BLAST of CX297914 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 2.073e-11 Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 3 Query: 24 SQVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 194 ++VVYDRE+GRSRGFGFVT +S E+ +AI +L+G L GR IRV+VAE R +R F Sbjct: 259 ARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSRRNTF 315 The following BLAST results are available for this feature:
BLAST of CX297914 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
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Sequences
The
following sequences are available for this feature:
EST sequence >CX297914 ID=CX297914; Name=CX297914; organism=Citrus clementina; type=EST; length=470bpback to top |