CX298468

Overview
NameCX298468
Unique NameCX298468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX298468_ssr553 microsatellite CX298468_ssr553:553..562. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RHOCS (50S ribosomal protein L20 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplT PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.332e-32
Identity = 64/102 (62.75%), Postives = 82/102 (80.39%), Query Frame = -3
Query:  320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625
            K++ KLAKG+RGR+  C RIA ERVEKAL+Y+YRDRRN+KRD R LWIQRINAG R HG+ Y  FMHGL +  I+++RKVLS+++  EP SFKALV+ ++ A
Sbjct:   15 KKVLKLAKGYRGRSSKCYRIALERVEKALRYAYRDRRNRKRDFRGLWIQRINAGARLHGLTYSKFMHGLKRAGIEVDRKVLSDIAAREPESFKALVEQAQKA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_EHRCJ (50S ribosomal protein L20 OS=Ehrlichia canis (strain Jake) GN=rplT PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.860e-32
Identity = 64/106 (60.38%), Postives = 84/106 (79.25%), Query Frame = -3
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R   K++ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  RQHG+ Y +F+HGL   NI LNRKVL++++++   +FK +VDI++ A
Sbjct:   11 RARHKKVIKLAKGYRGRSKNCYRIALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAARQHGLLYSDFIHGLSLANITLNRKVLADMAVNNQDNFKQIVDITKEA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_EHRCR (50S ribosomal protein L20 OS=Ehrlichia chaffeensis (strain Arkansas) GN=rplT PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.500e-31
Identity = 62/106 (58.49%), Postives = 82/106 (77.36%), Query Frame = -3
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R   K++ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  RQHG+ Y +F+HGL   N+ LNRKVL++++++    FK +VD+ + A
Sbjct:   11 RARHKKVIKLAKGYRGRSKNCYRIALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAVRQHGLLYSDFIHGLSLANVTLNRKVLADMAVNHKDHFKQIVDLIKEA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_EHRRW (50S ribosomal protein L20 OS=Ehrlichia ruminantium (strain Welgevonden) GN=rplT PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.796e-31
Identity = 60/106 (56.60%), Postives = 84/106 (79.25%), Query Frame = -3
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R   K++ KLAKG+RGR+KNC R+A +RVEKALQY+YRDRRN+KR  RSLWI RINA  RQ+G+ Y +F++GL   NI LNRK+L+++++H   +FK +VD+++ A
Sbjct:   11 RARHKKVIKLAKGYRGRSKNCYRVALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAVRQYGLLYSDFIYGLSLANITLNRKILADMAVHNKDNFKQIVDLTKEA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_EHRRG (50S ribosomal protein L20 OS=Ehrlichia ruminantium (strain Gardel) GN=rplT PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.796e-31
Identity = 60/106 (56.60%), Postives = 84/106 (79.25%), Query Frame = -3
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R   K++ KLAKG+RGR+KNC R+A +RVEKALQY+YRDRRN+KR  RSLWI RINA  RQ+G+ Y +F++GL   NI LNRK+L+++++H   +FK +VD+++ A
Sbjct:   11 RARHKKVIKLAKGYRGRSKNCYRVALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAVRQYGLLYSDFIYGLSLANITLNRKILADMAVHNKDNFKQIVDLTKEA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_MESSB (50S ribosomal protein L20 OS=Mesorhizobium sp. (strain BNC1) GN=rplT PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.722e-30
Identity = 61/108 (56.48%), Postives = 85/108 (78.70%), Query Frame = -3
Query:  302 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKN 625
            K++ K AKGF GR KN IRIA++ VEK+LQY+YRDR+N+KR+ R+LWIQRINA TR+HG+ YG F+ GL K  I+++RKVL+++++HEP +F ALV  S+ +    KN
Sbjct:   15 KKVLKAAKGFYGRRKNTIRIAKQAVEKSLQYAYRDRKNRKRNFRALWIQRINAATREHGLTYGRFIDGLNKAGIEIDRKVLADMAVHEPQAFAALVAKSKASLEYLKN 122          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_WOLPP (50S ribosomal protein L20 OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=rplT PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.862e-30
Identity = 59/97 (60.82%), Postives = 76/97 (78.35%), Query Frame = -3
Query:  335 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 625
            K++ KLAKG+RGRAKNC RIA +RVEKALQY+YRDRRN+KRD R LWI RINA  R+HG+ YG FMHGL    + LNRK+L+E++++    F  L++
Sbjct:   15 KKVLKLAKGYRGRAKNCYRIALQRVEKALQYAYRDRRNRKRDFRGLWIIRINAAAREHGLTYGRFMHGLKLVGVDLNRKILAEMAVNHKDDFAKLIE 111          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RHILO (50S ribosomal protein L20 OS=Rhizobium loti GN=rplT PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.414e-29
Identity = 60/108 (55.56%), Postives = 83/108 (76.85%), Query Frame = -3
Query:  302 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKN 625
            K++ K AKGF GR KN IRIA++ VEK+LQY+YRDR+N+KR  R+LWIQRINA T +HG+ YG F+ GL K  I+++RK+LS++++HEP +F ALV  ++ A    KN
Sbjct:   15 KKVLKAAKGFYGRRKNTIRIAKQAVEKSLQYAYRDRKNRKRSFRALWIQRINAATHEHGLTYGRFIDGLNKAGIEIDRKILSDMAIHEPQAFAALVAKAKVALEYLKN 122          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ORITI (50S ribosomal protein L20 OS=Orientia tsutsugamushi (strain Ikeda) GN=rplT PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.414e-29
Identity = 60/109 (55.05%), Postives = 84/109 (77.06%), Query Frame = -3
Query:  320 KRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 646
            K  +   K+I KLAKG+RGRAKNC RIA ++VEKALQYSYRDRRN+KR  R+LWIQRINA  RQ+ + Y  F++GL + NI ++RKV+++L++H   SF  LV++++ +
Sbjct:    8 KVNKNRHKKILKLAKGYRGRAKNCFRIAIQKVEKALQYSYRDRRNRKRQFRALWIQRINAAVRQYDITYSQFINGLKQANITVDRKVMADLAVHNADSFVHLVELTKKS 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_WOLWR (50S ribosomal protein L20 OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=rplT PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.847e-29
Identity = 61/97 (62.89%), Postives = 76/97 (78.35%), Query Frame = -3
Query:  335 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 625
            K+I KLAKG+RGRAK+C RIA +RVEKALQY+YRDRR +KRD RSLWI RINA  R+HG+ YG FMHGL    I LNRK+L+E++++    F  LV+
Sbjct:   15 KKILKLAKGYRGRAKSCYRIALQRVEKALQYAYRDRRTRKRDFRSLWIIRINAAAREHGLTYGRFMHGLTLAGIDLNRKILAEMAVNYKDDFAKLVE 111          
The following BLAST results are available for this feature:
BLAST of CX298468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL20_RHOCS2.332e-3262.7550S ribosomal protein L20 OS=Rhodospirillum centen... [more]
RL20_EHRCJ8.860e-3260.3850S ribosomal protein L20 OS=Ehrlichia canis (stra... [more]
RL20_EHRCR7.500e-3158.4950S ribosomal protein L20 OS=Ehrlichia chaffeensis... [more]
RL20_EHRRW9.796e-3156.6050S ribosomal protein L20 OS=Ehrlichia ruminantium... [more]
RL20_EHRRG9.796e-3156.6050S ribosomal protein L20 OS=Ehrlichia ruminantium... [more]
RL20_MESSB3.722e-3056.4850S ribosomal protein L20 OS=Mesorhizobium sp. (st... [more]
RL20_WOLPP4.862e-3060.8250S ribosomal protein L20 OS=Wolbachia pipientis s... [more]
RL20_RHILO1.414e-2955.5650S ribosomal protein L20 OS=Rhizobium loti GN=rpl... [more]
RL20_ORITI1.414e-2955.0550S ribosomal protein L20 OS=Orientia tsutsugamush... [more]
RL20_WOLWR1.847e-2962.8950S ribosomal protein L20 OS=Wolbachia sp. subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionC06012E06SK RindPdig24 Citrus clementina cDNA clone C06012E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298468 ID=CX298468; Name=CX298468; organism=Citrus clementina; type=EST; length=714bp
TTTTTTTTTGATATAACCACATCGCTATTCTTAGATAAGAAAAAGCTCAA
CCTTAACATGCAAGACATGAAGACAATCAGGAAACTTGCAATATCTGATT
TCAAACATTATCAACCACAAAGGTACTTATCAGTGTTGACCCTCAATTCT
TTACAAAACACATAAGCAGTCTAACTGTGTTCGCCATGACGCATCCCTTG
CATTCCAGTAATATTAAAATACTAAAGAATGCAATATTCGGGTCACTAAT
TACTAACTACGCATTGATTGAAATGTCAGCCTTTCTGGGAGGATGCACAA
TATTTTTGTTTCCAGGGAAGGCATTGCGAGAGATGTCTACAAGGGCCTTG
AAACTATATGGTTCATGCATCGACAGCTCTGACAGAACTTTCCTGTTCAG
TTGGATGTTCTCCTTCATCAGTCCATGCATAAAGTTACCATAGTTAACGC
CGTGTTGGCGAGTGCCGGCGTTGATGCGTTGAATCCAAAGGGAGCGCATG
TCACGCTTCTTGTTGCGGCGGTCTCTGTAGGAATACTGCAATGCTTTCTC
CACTCTCTCTCTTGCTATTCTTATGCAATTTTTCGCTCTTCCTCTGAACC
CCTTTGCCAGCTTAAATATCTCCTTCTTGTTCATCCTTTCTCTCTTTTCT
TTAATCCTTAAACAATGATGAATTCGTTCCTTCGATTCTCACTCTTCTCT
TCTCCTCTCTTCTC
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