CX299661

Overview
NameCX299661
Unique NameCX299661
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length548
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14842 contig Ccv1_Contig14842:679..1226. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODF_SOYBN (Superoxide dismutase [Fe], chloroplastic OS=Glycine max GN=SODB PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.660e-25
Identity = 55/68 (80.88%), Postives = 60/68 (88.24%), Query Frame = 3
Query:    6 LLVVSTPNAVNPLVWD-YSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKAPAT 206
            L+V+ +PNAVNPLVW  Y PLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSW++VS RLE AKA  T
Sbjct:  179 LVVLKSPNAVNPLVWGGYYPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWDAVSSRLEQAKALIT 246          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODF_NICPL (Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.538e-23
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 3
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 197
            L +V TPNA NPLV  Y+PLLTIDVWEHAYYLDFQNRRPDYIS+FM+KLVSWE+VS RL++A A
Sbjct:  139 LALVKTPNAENPLVLGYTPLLTIDVWEHAYYLDFQNRRPDYISIFMEKLVSWEAVSSRLKAATA 202          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODF_ARATH (Superoxide dismutase [Fe], chloroplastic OS=Arabidopsis thaliana GN=SODB PE=1 SV=4)

HSP 1 Score: 105.145 bits (261), Expect = 2.221e-22
Identity = 51/64 (79.69%), Postives = 53/64 (82.81%), Query Frame = 3
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 197
            L VV TPNAVNPLV    PLLTIDVWEHAYYLDFQNRRPDYI  FM  LVSWE+VS RLE+AKA
Sbjct:  146 LKVVKTPNAVNPLVLGSFPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAAKA 209          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODF_SYNY3 (Superoxide dismutase [Fe] OS=Synechocystis sp. (strain PCC 6803) GN=sodB PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 1.541e-15
Identity = 37/63 (58.73%), Postives = 48/63 (76.19%), Query Frame = 3
Query:    3 SLLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 191
            +L V  T NA NP+    +PLLT+DVWEHAYYLD+QNRRPDYI+ F+ KLV+W+ V+  L +A
Sbjct:  137 TLKVTKTGNAENPMTAGQTPLLTMDVWEHAYYLDYQNRRPDYIADFLGKLVNWDFVAANLAAA 199          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODF_PLEBO (Superoxide dismutase [Fe] OS=Plectonema boryanum GN=sodB PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.541e-15
Identity = 37/60 (61.67%), Postives = 45/60 (75.00%), Query Frame = 3
Query:    3 SLLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 182
            +L V  TPNA NPLV    PLLT+DVWEHAYYLDFQN RP +I  F+D LV+W+ V++ L
Sbjct:  138 TLKVTKTPNAENPLVHGQKPLLTLDVWEHAYYLDFQNARPAFIKNFLDNLVNWDFVAQNL 197          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODF_SYNE7 (Superoxide dismutase [Fe] OS=Synechococcus elongatus (strain PCC 7942) GN=sodB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.858e-15
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 3
Query:    3 SLLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 197
            +L +  T NA  P+    +PLLTIDVWEHAYYLD+QNRRPDYIS F++KL +W+  S    +A A
Sbjct:  137 TLKITKTGNADTPIAHGQTPLLTIDVWEHAYYLDYQNRRPDYISTFVEKLANWDFASANYAAAIA 201          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODM_BACHD (Superoxide dismutase [Mn] OS=Bacillus halodurans GN=sodA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.458e-14
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 3
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 194
            L + STPN   PL+   +P+L +DVWEHAYYL++QNRRPDYIS F + +V+W+ V+KR   AK
Sbjct:  141 LEITSTPNQDTPLMEGKTPILGLDVWEHAYYLNYQNRRPDYISAFWN-VVNWDEVAKRYNEAK 202          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODF_RHOCA (Superoxide dismutase [Fe] OS=Rhodobacter capsulatus GN=sodB PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.105e-13
Identity = 31/60 (51.67%), Postives = 46/60 (76.67%), Query Frame = 3
Query:    3 SLLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 182
            +L +  T N VNPL +  + LL  DVWEH+YY+DF+N+RP Y++ F+DKLV+WE+V+ R+
Sbjct:  141 ALKITKTENGVNPLCFGQTALLGCDVWEHSYYIDFRNKRPAYLTNFLDKLVNWENVASRM 200          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODM_BACCA (Superoxide dismutase [Mn] OS=Bacillus caldotenax GN=sodA PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.214e-13
Identity = 33/64 (51.56%), Postives = 48/64 (75.00%), Query Frame = 3
Query:    6 LLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 197
            L + STPN  +P++   +P+L +DVWEHAYYL +QNRRP+YI+ F + +V+W+ V+KR   AKA
Sbjct:  141 LEITSTPNQDSPIMEGKTPILGLDVWEHAYYLKYQNRRPEYIAAFWN-IVNWDEVAKRYSEAKA 203          
BLAST of CX299661 vs. ExPASy Swiss-Prot
Match: SODM_STAS1 (Superoxide dismutase [Mn/Fe] OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=sodA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.198e-13
Identity = 34/64 (53.12%), Postives = 47/64 (73.44%), Query Frame = 3
Query:    3 SLLVVSTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 194
            +L +V+TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYIS F + +V+WE V +   +AK
Sbjct:  137 NLEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYISAFWN-VVNWEKVDELYNAAK 199          
The following BLAST results are available for this feature:
BLAST of CX299661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
SODF_SOYBN3.660e-2580.88Superoxide dismutase [Fe], chloroplastic OS=Glycin... [more]
SODF_NICPL1.538e-2378.13Superoxide dismutase [Fe], chloroplastic (Fragment... [more]
SODF_ARATH2.221e-2279.69Superoxide dismutase [Fe], chloroplastic OS=Arabid... [more]
SODF_SYNY31.541e-1558.73Superoxide dismutase [Fe] OS=Synechocystis sp. (st... [more]
SODF_PLEBO1.541e-1561.67Superoxide dismutase [Fe] OS=Plectonema boryanum G... [more]
SODF_SYNE75.858e-1555.38Superoxide dismutase [Fe] OS=Synechococcus elongat... [more]
SODM_BACHD8.458e-1455.56Superoxide dismutase [Mn] OS=Bacillus halodurans G... [more]
SODF_RHOCA1.105e-1351.67Superoxide dismutase [Fe] OS=Rhodobacter capsulatu... [more]
SODM_BACCA3.214e-1351.56Superoxide dismutase [Mn] OS=Bacillus caldotenax G... [more]
SODM_STAS14.198e-1353.13Superoxide dismutase [Mn/Fe] OS=Staphylococcus sap... [more]

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Properties
Property NameValue
Genbank descriptionC06024G12SK RindPdig24 Citrus clementina cDNA clone C06024G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299661 ID=CX299661; Name=CX299661; organism=Citrus clementina; type=EST; length=548bp
AGAGCCTTTTAGTGGTGTCGACTCCCAATGCTGTCAATCCTCTTGTCTGG
GATTACTCGCCGCTCCTTACTATTGATGTATGGGAGCATGCTTATTACCT
CGACTTTCAGAATCGACGACCTGATTACATATCAGTTTTCATGGATAAGC
TTGTATCATGGGAATCAGTAAGTAAAAGACTGGAATCAGCCAAAGCTCCA
GCTACCTAGATTGAAATGGAAGAATGATGAAGGAAGATGAAGAGAAAATA
AATAATAAGCTGCTTGGTAGCAACACTATGTTGTGCTGATGATACTTTGC
TGAACAATAAAAATAGTTAGGTCTTTGGTACACACTACTTTGTGATTAGT
AATCTCTATTGTCAAAGTGTTGGTTTCTTCTTATAACAATCAGGGTATAA
TAAAACCTATCAAAGTATATGTATGAGTTACTTTTTGAAAATAGTTTTTG
GATGACTAATATTACTTTCAGGCCTGTTTAGTATGTTGAATACTATTATC
TTGGACTATAAATTATATTTTTAATAATCAATCAATAATTGTATTTTT
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