CX299670

Overview
NameCX299670
Unique NameCX299670
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length331
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14473 contig Ccv1_Contig14473:1009..1339. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX299670 vs. ExPASy Swiss-Prot
Match: CYSEP_RICCO (Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.617e-13
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    1 GFIRMQRGISDKKGLCGIAMEASYPIKKSATNPTGPSDYPKDEL 132
            G+IRM+RGISDK+GLCGIAMEASYPIKKS+ NP+G    PKDEL
Sbjct:  317 GYIRMERGISDKEGLCGIAMEASYPIKKSSNNPSGIKSSPKDEL 360
[Close]
BLAST of CX299670 vs. ExPASy Swiss-Prot
Match: CYSEP_VIGMU (Vignain OS=Vigna mungo PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.582e-11
Identity = 32/44 (72.73%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 GFIRMQRGISDKKGLCGIAMEASYPIKKSATNPTGPSDYPKDEL 132
            G+IRMQR IS K+GLCGIAM ASYPIK S+ NPTG    PKDEL
Sbjct:  319 GYIRMQRNISKKEGLCGIAMMASYPIKNSSDNPTGSLSSPKDEL 362
The following BLAST results are available for this feature:
BLAST of CX299670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CYSEP_RICCO1.617e-1377.27Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1[more]
CYSEP_VIGMU2.582e-1172.73Vignain OS=Vigna mungo PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC06024H09SK RindPdig24 Citrus clementina cDNA clone C06024H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299670 ID=CX299670; Name=CX299670; organism=Citrus clementina; type=EST; length=331bp
GGGTTCATCAGAATGCAGCGCGGCATCTCAGACAAAAAGGGACTCTGTGG
TATTGCAATGGAAGCTTCATATCCCATCAAGAAATCTGCAACAAACCCAA
CAGGACCTTCAGATTATCCTAAGGATGAGCTCTAGACACGGTTCACTATT
GTCTTTGGCTTTTCTCTGCATTTCAAGCTCAGCGGTTATCTCTTCTGTGT
TAAAGTTGCATGTAATATGCCCTTGTGATTCATGATTGAATAATGTTTCG
ATTTATGCAAATAAAGCCAACATTTTACAGAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAACCTCGGGGGGGGGCCCGGT
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