CX299811

Overview
NameCX299811
Unique NameCX299811
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length300
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig108 contig Ccv1_Contig108:1055..1354. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299811 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.121e-25
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 3
Query:    3 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 161
            EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  215 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267          
BLAST of CX299811 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.121e-25
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 3
Query:    3 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 161
            EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  215 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267          
BLAST of CX299811 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.121e-25
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 3
Query:    3 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 161
            EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  213 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of CX299811 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 4.121e-25
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 3
Query:    3 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 161
            EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  209 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261          
BLAST of CX299811 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 4.121e-25
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 3
Query:    3 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 161
            EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  213 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of CX299811 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.029e-25
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 3
Query:    3 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 161
            EIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  222 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274          
BLAST of CX299811 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.029e-25
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 3
Query:    3 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 161
            EIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  226 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278          
BLAST of CX299811 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.029e-25
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 3
Query:    3 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 161
            EIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  226 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278          
BLAST of CX299811 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.029e-25
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 3
Query:    3 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 161
            E+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  213 ELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of CX299811 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.029e-25
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 3
Query:    3 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 161
            E+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  154 ELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206          
The following BLAST results are available for this feature:
BLAST of CX299811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CB24_TOBAC4.121e-25100.00Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB23_NICPL4.121e-25100.00Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB22_TOBAC4.121e-25100.00Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB22_ORYSJ4.121e-25100.00Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ORYSJ4.121e-25100.00Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2B_PINSY7.029e-2598.11Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2A_PYRPY7.029e-2598.11Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2A_PINSY7.029e-2598.11Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB29_MAIZE7.029e-2598.11Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB22_CUCSA7.029e-2598.11Chlorophyll a-b binding protein of LHCII type 1 (F... [more]

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Properties
Property NameValue
Genbank descriptionC07002G01SK NTLeaf1 Citrus clementina cDNA clone C07002G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299811 ID=CX299811; Name=CX299811; organism=Citrus clementina; type=EST; length=300bp
AGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTC
GTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCA
CTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTTG
TCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTC
TTGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGT
TGTGATTATTTATAAAATGCTTCAATTTGATCTAAAAAAAAAAAAAAAAA
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