CX300114

Overview
NameCX300114
Unique NameCX300114
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length216
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10270 contig Ccv1_Contig10270:371..586. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300114 vs. ExPASy Swiss-Prot
Match: RL193_ARATH (60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 3.528e-29
Identity = 62/72 (86.11%), Postives = 66/72 (91.67%), Query Frame = 1
Query:    1 RMRVLRRLLRKYRESKNIDKHMYHDMYMKVMGNVFKNKLVLMERIHKSKAEKARQKTLSDQLEAKRANNKAS 216
            RMRVLRRLL+KYRE+K ID+HMYHDMYMKV GNVFKNK VLME IHKSKAEKAR+KTLSDQ EAKRA NKAS
Sbjct:   98 RMRVLRRLLKKYRETKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKAS 169          
BLAST of CX300114 vs. ExPASy Swiss-Prot
Match: RL191_ARATH (60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.528e-29
Identity = 62/72 (86.11%), Postives = 66/72 (91.67%), Query Frame = 1
Query:    1 RMRVLRRLLRKYRESKNIDKHMYHDMYMKVMGNVFKNKLVLMERIHKSKAEKARQKTLSDQLEAKRANNKAS 216
            RMRVLRRLL+KYRE+K IDKHMYHDMYM+V GNVFKNK VLME IHKSKAEKAR+KTLSDQ EAKRA NKAS
Sbjct:   98 RMRVLRRLLKKYRETKKIDKHMYHDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKAS 169          
BLAST of CX300114 vs. ExPASy Swiss-Prot
Match: RL192_ARATH (60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.302e-27
Identity = 59/72 (81.94%), Postives = 62/72 (86.11%), Query Frame = 1
Query:    1 RMRVLRRLLRKYRESKNIDKHMYHDMYMKVMGNVFKNKLVLMERIHKSKAEKARQKTLSDQLEAKRANNKAS 216
            RMRVLRR L KYRESK ID+HMYHDMYMKV GNVFKNK VLME IHK KAEKAR+KTL+DQ EAKR  NKAS
Sbjct:   98 RMRVLRRFLSKYRESKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKAS 169          
BLAST of CX300114 vs. ExPASy Swiss-Prot
Match: RL19_XENLA (60S ribosomal protein L19 OS=Xenopus laevis GN=rpl19 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.215e-23
Identity = 49/70 (70.00%), Postives = 60/70 (85.71%), Query Frame = 1
Query:    1 RMRVLRRLLRKYRESKNIDKHMYHDMYMKVMGNVFKNKLVLMERIHKSKAEKARQKTLSDQLEAKRANNK 210
            RMR+LRRLLR+YRESK ID+HMYH +Y+KV GNVFKNK +LME IHK KA+KAR+K L+DQ EA+R+  K
Sbjct:   98 RMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTK 167          
BLAST of CX300114 vs. ExPASy Swiss-Prot
Match: RL19_RAT (60S ribosomal protein L19 OS=Rattus norvegicus GN=Rpl19 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.215e-23
Identity = 49/70 (70.00%), Postives = 60/70 (85.71%), Query Frame = 1
Query:    1 RMRVLRRLLRKYRESKNIDKHMYHDMYMKVMGNVFKNKLVLMERIHKSKAEKARQKTLSDQLEAKRANNK 210
            RMR+LRRLLR+YRESK ID+HMYH +Y+KV GNVFKNK +LME IHK KA+KAR+K L+DQ EA+R+  K
Sbjct:   98 RMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTK 167          
BLAST of CX300114 vs. ExPASy Swiss-Prot
Match: RL19_PONAB (60S ribosomal protein L19 OS=Pongo abelii GN=RPL19 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.215e-23
Identity = 49/70 (70.00%), Postives = 60/70 (85.71%), Query Frame = 1
Query:    1 RMRVLRRLLRKYRESKNIDKHMYHDMYMKVMGNVFKNKLVLMERIHKSKAEKARQKTLSDQLEAKRANNK 210
            RMR+LRRLLR+YRESK ID+HMYH +Y+KV GNVFKNK +LME IHK KA+KAR+K L+DQ EA+R+  K
Sbjct:   98 RMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTK 167          
BLAST of CX300114 vs. ExPASy Swiss-Prot
Match: RL19_MOUSE (60S ribosomal protein L19 OS=Mus musculus GN=Rpl19 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.215e-23
Identity = 49/70 (70.00%), Postives = 60/70 (85.71%), Query Frame = 1
Query:    1 RMRVLRRLLRKYRESKNIDKHMYHDMYMKVMGNVFKNKLVLMERIHKSKAEKARQKTLSDQLEAKRANNK 210
            RMR+LRRLLR+YRESK ID+HMYH +Y+KV GNVFKNK +LME IHK KA+KAR+K L+DQ EA+R+  K
Sbjct:   98 RMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTK 167          
BLAST of CX300114 vs. ExPASy Swiss-Prot
Match: RL19_MACFA (60S ribosomal protein L19 OS=Macaca fascicularis GN=RPL19 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.215e-23
Identity = 49/70 (70.00%), Postives = 60/70 (85.71%), Query Frame = 1
Query:    1 RMRVLRRLLRKYRESKNIDKHMYHDMYMKVMGNVFKNKLVLMERIHKSKAEKARQKTLSDQLEAKRANNK 210
            RMR+LRRLLR+YRESK ID+HMYH +Y+KV GNVFKNK +LME IHK KA+KAR+K L+DQ EA+R+  K
Sbjct:   98 RMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTK 167          
BLAST of CX300114 vs. ExPASy Swiss-Prot
Match: RL19_HUMAN (60S ribosomal protein L19 OS=Homo sapiens GN=RPL19 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.215e-23
Identity = 49/70 (70.00%), Postives = 60/70 (85.71%), Query Frame = 1
Query:    1 RMRVLRRLLRKYRESKNIDKHMYHDMYMKVMGNVFKNKLVLMERIHKSKAEKARQKTLSDQLEAKRANNK 210
            RMR+LRRLLR+YRESK ID+HMYH +Y+KV GNVFKNK +LME IHK KA+KAR+K L+DQ EA+R+  K
Sbjct:   98 RMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTK 167          
BLAST of CX300114 vs. ExPASy Swiss-Prot
Match: RL19_BOVIN (60S ribosomal protein L19 OS=Bos taurus GN=RPL19 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.215e-23
Identity = 49/70 (70.00%), Postives = 60/70 (85.71%), Query Frame = 1
Query:    1 RMRVLRRLLRKYRESKNIDKHMYHDMYMKVMGNVFKNKLVLMERIHKSKAEKARQKTLSDQLEAKRANNK 210
            RMR+LRRLLR+YRESK ID+HMYH +Y+KV GNVFKNK +LME IHK KA+KAR+K L+DQ EA+R+  K
Sbjct:   98 RMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTK 167          
The following BLAST results are available for this feature:
BLAST of CX300114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RL193_ARATH3.528e-2986.1160S ribosomal protein L19-3 OS=Arabidopsis thalian... [more]
RL191_ARATH3.528e-2986.1160S ribosomal protein L19-1 OS=Arabidopsis thalian... [more]
RL192_ARATH3.302e-2781.9460S ribosomal protein L19-2 OS=Arabidopsis thalian... [more]
RL19_XENLA2.215e-2370.0060S ribosomal protein L19 OS=Xenopus laevis GN=rpl... [more]
RL19_RAT2.215e-2370.0060S ribosomal protein L19 OS=Rattus norvegicus GN=... [more]
RL19_PONAB2.215e-2370.0060S ribosomal protein L19 OS=Pongo abelii GN=RPL19... [more]
RL19_MOUSE2.215e-2370.0060S ribosomal protein L19 OS=Mus musculus GN=Rpl19... [more]
RL19_MACFA2.215e-2370.0060S ribosomal protein L19 OS=Macaca fascicularis G... [more]
RL19_HUMAN2.215e-2370.0060S ribosomal protein L19 OS=Homo sapiens GN=RPL19... [more]
RL19_BOVIN2.215e-2370.0060S ribosomal protein L19 OS=Bos taurus GN=RPL19 P... [more]

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Properties
Property NameValue
Genbank descriptionC07006C09SK SaltLeaf1 Citrus clementina cDNA clone C07006C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300114 ID=CX300114; Name=CX300114; organism=Citrus clementina; type=EST; length=216bp
AGGATGCGTGTGCTCAGGCGGTTGCTCCGCAAATACCGAGAGTCAAAGAA
CATTGACAAGCACATGTACCATGACATGTACATGAAGGTGATGGGTAATG
TATTTAAAAACAAGCTTGTCCTCATGGAGAGAATTCACAAGTCAAAGGCT
GAAAAGGCAAGACAGAAGACTCTTTCTGACCAGCTTGAGGCTAAGCGCGC
CAACAACAAGGCCAGC
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