CX300149

Overview
NameCX300149
Unique NameCX300149
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length472
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig828 contig Ccv1_Contig828:1..472. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SR54C_ARATH (Signal recognition particle 54 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=FFC PE=1 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 2.106e-72
Identity = 133/156 (85.26%), Postives = 149/156 (95.51%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVM 470
            MEDLEPFYPDRMAGRILGMGDVLSFVEKA EVM+QEDAE++QKKIMSA FDFNDFLKQTR VA+MGSM+RV+GMIPGMGK++PAQ+REAEK+L +MEAMIE MTPEERE+PELLAESP RRKR+A+DSGKTEQQVS LVAQ+FQMRV+MKNLMGVM
Sbjct:  354 MEDLEPFYPDRMAGRILGMGDVLSFVEKATEVMRQEDAEDLQKKIMSAKFDFNDFLKQTRAVAKMGSMTRVLGMIPGMGKVSPAQIREAEKNLLVMEAMIEVMTPEERERPELLAESPERRKRIAKDSGKTEQQVSALVAQIFQMRVKMKNLMGVM 509          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_SYNY3 (Signal recognition particle protein OS=Synechocystis sp. (strain PCC 6803) GN=ffh PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.627e-40
Identity = 82/157 (52.23%), Postives = 112/157 (71.34%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL-MGVM 470
            +E L+PFYPDR+A RIL MGDVL+ VEKAQE +   D E++Q KI+ A FDF+DF+KQ R +  MGS+  ++ MIPGM K++   + + EK LK  EAMI +MT EER+ P+LLA+SP RR+R+AQ SG +E  VS+L+    +MR  M+ + MG M
Sbjct:  278 VEALQPFYPDRLASRILNMGDVLTLVEKAQEAIDVGDVEKLQNKILEATFDFDDFIKQMRFMKNMGSLGGLLKMIPGMNKLSSGDIEKGEKELKRTEAMISSMTTEERKNPDLLAKSPSRRRRIAQGSGHSETDVSKLITNFTKMRTMMQQMGMGGM 434          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_SYNE7 (Signal sequence-binding protein OS=Synechococcus elongatus (strain PCC 7942) GN=ffh PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.627e-40
Identity = 81/153 (52.94%), Postives = 113/153 (73.86%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGM-GKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458
            +E L+PF+P+RMA RILGMGDVL+ VEKAQE +   D E+MQ+KI++A FDF DFLKQ R +  MGS++  I +IPG+ GKI   Q+R+ E+ LK +EAMI +MTP+ER  P+LL+ SP RR R+A+  G+TE ++ Q++ Q  QMR  M+ +
Sbjct:  278 VEALQPFHPERMASRILGMGDVLTLVEKAQEEIDLADVEKMQEKILAAKFDFTDFLKQMRLLKNMGSLAGFIKLIPGLGGKINDEQLRQGERQLKRVEAMINSMTPQERRDPDLLSNSPSRRHRIAKGCGQTEAEIRQIIQQFQQMRTMMQQM 430          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_MYCTU (Signal recognition particle protein OS=Mycobacterium tuberculosis GN=ffh PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.879e-29
Identity = 65/156 (41.67%), Postives = 98/156 (62.82%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVM 470
            +ED + F+PDRMA RILGMGDVLS +E+A++V   + AEE   KI +      DFL+Q   V +MG +  ++GM+PG  ++  A     +K L  ++A+I  MTP+ER  P+++  S  RR R+A  SG T  +V+QLV + F+ R  M +++G M
Sbjct:  285 LEDFDVFHPDRMASRILGMGDVLSLIEQAEQVFDAQQAEEAAAKIGAGELTLEDFLEQMLAVRKMGPIGNLLGMLPGAAQMKDALAEVDDKQLDRVQAIIRGMTPQERADPKIINAS--RRLRIANGSGVTVSEVNQLVERFFEARKMMSSMLGGM 438          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_MYCBO (Signal recognition particle protein OS=Mycobacterium bovis GN=ffh PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.879e-29
Identity = 65/156 (41.67%), Postives = 98/156 (62.82%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVM 470
            +ED + F+PDRMA RILGMGDVLS +E+A++V   + AEE   KI +      DFL+Q   V +MG +  ++GM+PG  ++  A     +K L  ++A+I  MTP+ER  P+++  S  RR R+A  SG T  +V+QLV + F+ R  M +++G M
Sbjct:  285 LEDFDVFHPDRMASRILGMGDVLSLIEQAEQVFDAQQAEEAAAKIGAGELTLEDFLEQMLAVRKMGPIGNLLGMLPGAAQMKDALAEVDDKQLDRVQAIIRGMTPQERADPKIINAS--RRLRIANGSGVTVSEVNQLVERFFEARKMMSSMLGGM 438          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_MYCLE (Signal recognition particle protein OS=Mycobacterium leprae GN=ffh PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.760e-29
Identity = 64/156 (41.03%), Postives = 99/156 (63.46%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVM 470
            ++D + F+PDRMA RILGMGDVLS +E+A++V   E AE    KI++      DFL+Q   V +MG +  ++GM+PG G++     +  +K L  ++A+I  MTP+ER  P+++  S  RR R+A  SG T  +V+QLV + F+ R  M +++G M
Sbjct:  285 LDDFDVFHPDRMASRILGMGDVLSLIEQAEQVFDAEQAEAAAAKIVAGELTLEDFLEQMLAVRKMGLIGNLLGMLPGAGQVKEVLEQVDDKQLDRLQAIIRGMTPQERADPKIINAS--RRLRIANGSGVTVSEVNQLVDRFFEARKMMSSVLGGM 438          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_AQUAE (Signal recognition particle protein OS=Aquifex aeolicus GN=ffh PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 4.911e-29
Identity = 64/152 (42.11%), Postives = 101/152 (66.45%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458
            +ED+EPFYPDR+A RILG+GD+ S VEKAQEV+ ++ A+ M  K+M+  FD  D  +  R + +MG + +++ MIPG+       ++  EK  K +EA+I +MTPEER  P+++  S  R+KR+A+ SG T   V++L+ +  +M+  M+ L
Sbjct:  273 IEDIEPFYPDRIAQRILGLGDIQSLVEKAQEVITEDKAQVMATKVMTGEFDLEDLREMLRMIQQMGPLDKLLSMIPGVAP-QLKHLKVDEKQFKKIEAIINSMTPEERRNPKIINMS--RKKRIARGSGTTVSDVNKLLKRYEEMKKMMRKL 421          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_BACSU (Signal recognition particle protein OS=Bacillus subtilis GN=ffh PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.866e-28
Identity = 63/153 (41.18%), Postives = 108/153 (70.59%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458
            ++ LEPF+P+RMA RILGMGDVL+ +EKAQ  + ++ A+E+++K+ + +F  +DFL+Q   V  MG +  ++ M+PG GK+   + ++  EK L  +EA+I++MT  E+E+P+++  S  RRKR+A+ SG + Q+V++L+ Q  +M+  MK +
Sbjct:  280 LDALEPFHPERMASRILGMGDVLTLIEKAQASVDEDKAKELEQKMRTMSFTLDDFLEQLGQVRNMGPLDELLQMMPGAGKMKGLKNIQVDEKQLNHVEAIIKSMTVLEKEQPDIINAS--RRKRIAKGSGTSVQEVNRLLKQFDEMKKMMKQM 430          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_STRMU (Signal recognition particle protein OS=Streptococcus mutans GN=ffh PE=3 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 1.580e-27
Identity = 63/152 (41.45%), Postives = 96/152 (63.16%), Query Frame = 3
Query:    9 DLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP-AQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLM 461
            D+E F+PDRM+ RILGMGD+L+ +EKA +   ++ + E+ +K+   +FDFNDF++Q   V  MGSM  ++ MIPGM      A V+  E  +    A++ +MTPEERE P+LL  +P RR+R+A  SG T   V++ +    Q +  M+ +M
Sbjct:  282 DIETFHPDRMSSRILGMGDLLTLIEKASQDYDEQKSAELAEKMRENSFDFNDFIEQLDQVQNMGSMEDILKMIPGMANNPALANVKVDEGEIARKRAIVSSMTPEERENPDLL--TPSRRRRIASGSGNTFVNVNKFIKDFNQAKKMMQGVM 431          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_RICCN (Signal recognition particle protein OS=Rickettsia conorii GN=ffh PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 7.840e-27
Identity = 64/153 (41.83%), Postives = 102/153 (66.67%), Query Frame = 3
Query:    9 DLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIM---EAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458
            DLE F  +R+A RIL MGD++SFVEKA  ++ +E+AE+   K+    FD ND+L+Q R++ +MG    ++ M+PG GKI   Q+ +++ + KI+   EA+I +MTP+ER+ P+++  S  RRKR+A  +G T Q+V+ L+ Q  Q+   MK +
Sbjct:  282 DLEEFDAERLASRILDMGDIISFVEKAASIVDREEAEKTAAKLKKGKFDLNDYLQQMRSIKKMGGFGSILSMLPGSGKIMD-QIDQSKLNSKIIEHQEAIILSMTPKERKNPDIINAS--RRKRIAVGAGTTVQKVNILLKQYKQISEIMKKV 431          
The following BLAST results are available for this feature:
BLAST of CX300149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
SR54C_ARATH2.106e-7285.26Signal recognition particle 54 kDa protein, chloro... [more]
SRP54_SYNY31.627e-4052.23Signal recognition particle protein OS=Synechocyst... [more]
SRP54_SYNE71.627e-4052.94Signal sequence-binding protein OS=Synechococcus e... [more]
SRP54_MYCTU2.879e-2941.67Signal recognition particle protein OS=Mycobacteri... [more]
SRP54_MYCBO2.879e-2941.67Signal recognition particle protein OS=Mycobacteri... [more]
SRP54_MYCLE3.760e-2941.03Signal recognition particle protein OS=Mycobacteri... [more]
SRP54_AQUAE4.911e-2942.11Signal recognition particle protein OS=Aquifex aeo... [more]
SRP54_BACSU1.866e-2841.18Signal recognition particle protein OS=Bacillus su... [more]
SRP54_STRMU1.580e-2741.45Signal recognition particle protein OS=Streptococc... [more]
SRP54_RICCN7.840e-2741.83Signal recognition particle protein OS=Rickettsia ... [more]

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Properties
Property NameValue
Genbank descriptionC07006G05SK SaltLeaf1 Citrus clementina cDNA clone C07006G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300149 ID=CX300149; Name=CX300149; organism=Citrus clementina; type=EST; length=472bp
GAATGGAGGACCTTGAACCTTTCTACCCAGATCGCATGGCTGGACGTATC
TTAGGAATGGGAGATGTTCTCTCATTTGTAGAGAAGGCACAAGAAGTTAT
GCAACAAGAAGATGCTGAAGAAATGCAAAAGAAGATAATGAGTGCGAATT
TTGACTTCAATGATTTCTTAAAGCAAACCCGTACTGTTGCACGTATGGGT
TCGATGAGTCGTGTTATAGGAATGATCCCTGGAATGGGGAAGATTACTCC
TGCACAAGTTCGAGAAGCAGAGAAGAGTTTAAAAATAATGGAAGCAATGA
TCGAAGCAATGACACCTGAGGAAAGGGAGAAACCAGAACTGTTGGCTGAA
TCTCCTGTCAGAAGAAAAAGAGTTGCTCAAGATTCTGGGAAAACAGAACA
GCAGGTGAGCCAACTTGTTGCTCAACTCTTCCAAATGCGTGTGCGTATGA
AGAACTTAATGGGTGTAATGGA
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