CX300149
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SR54C_ARATH (Signal recognition particle 54 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=FFC PE=1 SV=1) HSP 1 Score: 270.781 bits (691), Expect = 2.106e-72 Identity = 133/156 (85.26%), Postives = 149/156 (95.51%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVM 470 MEDLEPFYPDRMAGRILGMGDVLSFVEKA EVM+QEDAE++QKKIMSA FDFNDFLKQTR VA+MGSM+RV+GMIPGMGK++PAQ+REAEK+L +MEAMIE MTPEERE+PELLAESP RRKR+A+DSGKTEQQVS LVAQ+FQMRV+MKNLMGVM Sbjct: 354 MEDLEPFYPDRMAGRILGMGDVLSFVEKATEVMRQEDAEDLQKKIMSAKFDFNDFLKQTRAVAKMGSMTRVLGMIPGMGKVSPAQIREAEKNLLVMEAMIEVMTPEERERPELLAESPERRKRIAKDSGKTEQQVSALVAQIFQMRVKMKNLMGVM 509
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_SYNY3 (Signal recognition particle protein OS=Synechocystis sp. (strain PCC 6803) GN=ffh PE=3 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 1.627e-40 Identity = 82/157 (52.23%), Postives = 112/157 (71.34%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL-MGVM 470 +E L+PFYPDR+A RIL MGDVL+ VEKAQE + D E++Q KI+ A FDF+DF+KQ R + MGS+ ++ MIPGM K++ + + EK LK EAMI +MT EER+ P+LLA+SP RR+R+AQ SG +E VS+L+ +MR M+ + MG M Sbjct: 278 VEALQPFYPDRLASRILNMGDVLTLVEKAQEAIDVGDVEKLQNKILEATFDFDDFIKQMRFMKNMGSLGGLLKMIPGMNKLSSGDIEKGEKELKRTEAMISSMTTEERKNPDLLAKSPSRRRRIAQGSGHSETDVSKLITNFTKMRTMMQQMGMGGM 434
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_SYNE7 (Signal sequence-binding protein OS=Synechococcus elongatus (strain PCC 7942) GN=ffh PE=3 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 1.627e-40 Identity = 81/153 (52.94%), Postives = 113/153 (73.86%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGM-GKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458 +E L+PF+P+RMA RILGMGDVL+ VEKAQE + D E+MQ+KI++A FDF DFLKQ R + MGS++ I +IPG+ GKI Q+R+ E+ LK +EAMI +MTP+ER P+LL+ SP RR R+A+ G+TE ++ Q++ Q QMR M+ + Sbjct: 278 VEALQPFHPERMASRILGMGDVLTLVEKAQEEIDLADVEKMQEKILAAKFDFTDFLKQMRLLKNMGSLAGFIKLIPGLGGKINDEQLRQGERQLKRVEAMINSMTPQERRDPDLLSNSPSRRHRIAKGCGQTEAEIRQIIQQFQQMRTMMQQM 430
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_MYCTU (Signal recognition particle protein OS=Mycobacterium tuberculosis GN=ffh PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 2.879e-29 Identity = 65/156 (41.67%), Postives = 98/156 (62.82%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVM 470 +ED + F+PDRMA RILGMGDVLS +E+A++V + AEE KI + DFL+Q V +MG + ++GM+PG ++ A +K L ++A+I MTP+ER P+++ S RR R+A SG T +V+QLV + F+ R M +++G M Sbjct: 285 LEDFDVFHPDRMASRILGMGDVLSLIEQAEQVFDAQQAEEAAAKIGAGELTLEDFLEQMLAVRKMGPIGNLLGMLPGAAQMKDALAEVDDKQLDRVQAIIRGMTPQERADPKIINAS--RRLRIANGSGVTVSEVNQLVERFFEARKMMSSMLGGM 438
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_MYCBO (Signal recognition particle protein OS=Mycobacterium bovis GN=ffh PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 2.879e-29 Identity = 65/156 (41.67%), Postives = 98/156 (62.82%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVM 470 +ED + F+PDRMA RILGMGDVLS +E+A++V + AEE KI + DFL+Q V +MG + ++GM+PG ++ A +K L ++A+I MTP+ER P+++ S RR R+A SG T +V+QLV + F+ R M +++G M Sbjct: 285 LEDFDVFHPDRMASRILGMGDVLSLIEQAEQVFDAQQAEEAAAKIGAGELTLEDFLEQMLAVRKMGPIGNLLGMLPGAAQMKDALAEVDDKQLDRVQAIIRGMTPQERADPKIINAS--RRLRIANGSGVTVSEVNQLVERFFEARKMMSSMLGGM 438
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_MYCLE (Signal recognition particle protein OS=Mycobacterium leprae GN=ffh PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 3.760e-29 Identity = 64/156 (41.03%), Postives = 99/156 (63.46%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVM 470 ++D + F+PDRMA RILGMGDVLS +E+A++V E AE KI++ DFL+Q V +MG + ++GM+PG G++ + +K L ++A+I MTP+ER P+++ S RR R+A SG T +V+QLV + F+ R M +++G M Sbjct: 285 LDDFDVFHPDRMASRILGMGDVLSLIEQAEQVFDAEQAEAAAAKIVAGELTLEDFLEQMLAVRKMGLIGNLLGMLPGAGQVKEVLEQVDDKQLDRLQAIIRGMTPQERADPKIINAS--RRLRIANGSGVTVSEVNQLVDRFFEARKMMSSVLGGM 438
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_AQUAE (Signal recognition particle protein OS=Aquifex aeolicus GN=ffh PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 4.911e-29 Identity = 64/152 (42.11%), Postives = 101/152 (66.45%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458 +ED+EPFYPDR+A RILG+GD+ S VEKAQEV+ ++ A+ M K+M+ FD D + R + +MG + +++ MIPG+ ++ EK K +EA+I +MTPEER P+++ S R+KR+A+ SG T V++L+ + +M+ M+ L Sbjct: 273 IEDIEPFYPDRIAQRILGLGDIQSLVEKAQEVITEDKAQVMATKVMTGEFDLEDLREMLRMIQQMGPLDKLLSMIPGVAP-QLKHLKVDEKQFKKIEAIINSMTPEERRNPKIINMS--RKKRIARGSGTTVSDVNKLLKRYEEMKKMMRKL 421
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_BACSU (Signal recognition particle protein OS=Bacillus subtilis GN=ffh PE=1 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 1.866e-28 Identity = 63/153 (41.18%), Postives = 108/153 (70.59%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458 ++ LEPF+P+RMA RILGMGDVL+ +EKAQ + ++ A+E+++K+ + +F +DFL+Q V MG + ++ M+PG GK+ + ++ EK L +EA+I++MT E+E+P+++ S RRKR+A+ SG + Q+V++L+ Q +M+ MK + Sbjct: 280 LDALEPFHPERMASRILGMGDVLTLIEKAQASVDEDKAKELEQKMRTMSFTLDDFLEQLGQVRNMGPLDELLQMMPGAGKMKGLKNIQVDEKQLNHVEAIIKSMTVLEKEQPDIINAS--RRKRIAKGSGTSVQEVNRLLKQFDEMKKMMKQM 430
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_STRMU (Signal recognition particle protein OS=Streptococcus mutans GN=ffh PE=3 SV=3) HSP 1 Score: 121.709 bits (304), Expect = 1.580e-27 Identity = 63/152 (41.45%), Postives = 96/152 (63.16%), Query Frame = 3 Query: 9 DLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP-AQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLM 461 D+E F+PDRM+ RILGMGD+L+ +EKA + ++ + E+ +K+ +FDFNDF++Q V MGSM ++ MIPGM A V+ E + A++ +MTPEERE P+LL +P RR+R+A SG T V++ + Q + M+ +M Sbjct: 282 DIETFHPDRMSSRILGMGDLLTLIEKASQDYDEQKSAELAEKMRENSFDFNDFIEQLDQVQNMGSMEDILKMIPGMANNPALANVKVDEGEIARKRAIVSSMTPEERENPDLL--TPSRRRRIASGSGNTFVNVNKFIKDFNQAKKMMQGVM 431
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_RICCN (Signal recognition particle protein OS=Rickettsia conorii GN=ffh PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 7.840e-27 Identity = 64/153 (41.83%), Postives = 102/153 (66.67%), Query Frame = 3 Query: 9 DLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIM---EAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458 DLE F +R+A RIL MGD++SFVEKA ++ +E+AE+ K+ FD ND+L+Q R++ +MG ++ M+PG GKI Q+ +++ + KI+ EA+I +MTP+ER+ P+++ S RRKR+A +G T Q+V+ L+ Q Q+ MK + Sbjct: 282 DLEEFDAERLASRILDMGDIISFVEKAASIVDREEAEKTAAKLKKGKFDLNDYLQQMRSIKKMGGFGSILSMLPGSGKIMD-QIDQSKLNSKIIEHQEAIILSMTPKERKNPDIINAS--RRKRIAVGAGTTVQKVNILLKQYKQISEIMKKV 431 The following BLAST results are available for this feature:
BLAST of CX300149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 97
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300149 ID=CX300149; Name=CX300149; organism=Citrus clementina; type=EST; length=472bpback to top |