CX300180

Overview
NameCX300180
Unique NameCX300180
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length410
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10228 contig Ccv1_Contig10228:432..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300180 vs. ExPASy Swiss-Prot
Match: PSBO_TOBAC (Oxygen-evolving enhancer protein 1, chloroplastic OS=Nicotiana tabacum GN=PSBO PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 1.883e-70
Identity = 128/136 (94.12%), Postives = 130/136 (95.59%), Query Frame = 1
Query:    1 GTANQCPTIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPENFGGEFLVPSYRGSSFLDP 408
            GTANQCPTIDGGV SFAFKPGKY AKKFCLEPTSFTVKAESVNKNAPPDFQ TKLMTRLTYTLDEIEGPFEVS DGT+KF EKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPE+F GEFLVPSYRGSSFLDP
Sbjct:  109 GTANQCPTIDGGVASFAFKPGKYNAKKFCLEPTSFTVKAESVNKNAPPDFQKTKLMTRLTYTLDEIEGPFEVSSDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPESFSGEFLVPSYRGSSFLDP 244          
BLAST of CX300180 vs. ExPASy Swiss-Prot
Match: PSBO_SOLTU (Oxygen-evolving enhancer protein 1, chloroplastic OS=Solanum tuberosum GN=PSBO PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 1.350e-68
Identity = 124/136 (91.18%), Postives = 129/136 (94.85%), Query Frame = 1
Query:    1 GTANQCPTIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPENFGGEFLVPSYRGSSFLDP 408
            GTANQCPTIDGGVDSFAFKPGKY AKKFCLEPTSFTVKAE V+KN+ PDFQ TKLMTRLTYTLDEIEGPFEVSPDGT+KF EKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPE+F  +FLVPSYRGSSFLDP
Sbjct:  109 GTANQCPTIDGGVDSFAFKPGKYNAKKFCLEPTSFTVKAEGVSKNSAPDFQKTKLMTRLTYTLDEIEGPFEVSPDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPESFSVDFLVPSYRGSSFLDP 244          
BLAST of CX300180 vs. ExPASy Swiss-Prot
Match: PSBO_SOLLC (Oxygen-evolving enhancer protein 1, chloroplastic OS=Solanum lycopersicum GN=PSBO PE=2 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 1.350e-68
Identity = 124/136 (91.18%), Postives = 129/136 (94.85%), Query Frame = 1
Query:    1 GTANQCPTIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPENFGGEFLVPSYRGSSFLDP 408
            GTANQCPTI+GGV SFAFKPGKY AKKFCLEPTSFTVKAE V+KN+ PDFQ TKLMTRLTYTLDEIEGPFEVSPDGT+KF EKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPE+F GEFLVPSYRGSSFLDP
Sbjct:  106 GTANQCPTIEGGVGSFAFKPGKYTAKKFCLEPTSFTVKAEGVSKNSAPDFQKTKLMTRLTYTLDEIEGPFEVSPDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPESFSGEFLVPSYRGSSFLDP 241          
BLAST of CX300180 vs. ExPASy Swiss-Prot
Match: PSBO_SPIOL (Oxygen-evolving enhancer protein 1, chloroplastic OS=Spinacia oleracea GN=PSBO PE=1 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 1.949e-67
Identity = 120/136 (88.24%), Postives = 128/136 (94.12%), Query Frame = 1
Query:    1 GTANQCPTIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPENFGGEFLVPSYRGSSFLDP 408
            GTANQCPT++GGVDSFAFKPGKY AKKFCLEPT F VKAE ++KN+ PDFQNTKLMTRLTYTLDEIEGPFEVS DGT+KF EKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPE+F G+FLVPSYRGSSFLDP
Sbjct:  107 GTANQCPTVEGGVDSFAFKPGKYTAKKFCLEPTKFAVKAEGISKNSGPDFQNTKLMTRLTYTLDEIEGPFEVSSDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPESFSGDFLVPSYRGSSFLDP 242          
BLAST of CX300180 vs. ExPASy Swiss-Prot
Match: PSBO_PEA (Oxygen-evolving enhancer protein 1, chloroplastic OS=Pisum sativum GN=PSBO PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 3.676e-66
Identity = 120/136 (88.24%), Postives = 126/136 (92.65%), Query Frame = 1
Query:    1 GTANQCPTIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPENFGGEFLVPSYRGSSFLDP 408
            GTANQCPTIDGGVDSF+FKPGKY AKK CLEPTSFTVK+E V KN P  FQNTKLMTRLTYTLDEIEGPFEVS DG++KF EKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKP++F GEFLVPSYRGSSFLDP
Sbjct:  105 GTANQCPTIDGGVDSFSFKPGKYNAKKLCLEPTSFTVKSEGVTKNTPLAFQNTKLMTRLTYTLDEIEGPFEVSADGSVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPDSFSGEFLVPSYRGSSFLDP 240          
BLAST of CX300180 vs. ExPASy Swiss-Prot
Match: PSBO_FRIAG (Oxygen-evolving enhancer protein 1, chloroplastic OS=Fritillaria agrestis GN=PSBO PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 5.308e-65
Identity = 114/136 (83.82%), Postives = 125/136 (91.91%), Query Frame = 1
Query:    1 GTANQCPTIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPENFGGEFLVPSYRGSSFLDP 408
            GTANQCPTI+GG +SF +K GKY  KK CLEPTSFTVKAE +NKNAPP+FQ TKLMTRLTYTLDEIEGPFEV+PDGT+KF EKDGIDYAAVTVQLPGGERVPFLFT+KQLVA+GKPE+F G +LVPSYRGSSFLDP
Sbjct:  106 GTANQCPTIEGGTESFGYKTGKYTLKKLCLEPTSFTVKAEGINKNAPPEFQKTKLMTRLTYTLDEIEGPFEVAPDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVATGKPESFSGSYLVPSYRGSSFLDP 241          
BLAST of CX300180 vs. ExPASy Swiss-Prot
Match: PSBO2_ARATH (Oxygen-evolving enhancer protein 1-2, chloroplastic OS=Arabidopsis thaliana GN=PSBO2 PE=1 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 1.182e-64
Identity = 115/136 (84.56%), Postives = 126/136 (92.65%), Query Frame = 1
Query:    1 GTANQCPTIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPENFGGEFLVPSYRGSSFLDP 408
            GTANQCPTIDGG ++F+FK GKY  KKFC EPTSFTVKA+SV+KNAPPDFQNTKLMTRLTYTLDEIEGPFEV  DG++KF E+DGIDYAAVTVQLPGGERVPFLFT+KQL ASGKPE+F G+FLVPSYRGSSFLDP
Sbjct:  108 GTANQCPTIDGGSETFSFKAGKYTGKKFCFEPTSFTVKADSVSKNAPPDFQNTKLMTRLTYTLDEIEGPFEVGSDGSVKFKEEDGIDYAAVTVQLPGGERVPFLFTVKQLEASGKPESFSGKFLVPSYRGSSFLDP 243          
BLAST of CX300180 vs. ExPASy Swiss-Prot
Match: PSBO1_ARATH (Oxygen-evolving enhancer protein 1-1, chloroplastic OS=Arabidopsis thaliana GN=PSBO1 PE=1 SV=2)

HSP 1 Score: 242.276 bits (617), Expect = 5.869e-64
Identity = 113/136 (83.09%), Postives = 127/136 (93.38%), Query Frame = 1
Query:    1 GTANQCPTIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPENFGGEFLVPSYRGSSFLDP 408
            GTANQCPTIDGG ++F+FKPGKY  KKFC EPTSFTVKA+SV+KNAPP+FQNTKLMTRLTYTLDEIEGPFEV+ DG++ F E+DGIDYAAVTVQLPGGERVPFLFT+KQL ASGKP++F G+FLVPSYRGSSFLDP
Sbjct:  109 GTANQCPTIDGGSETFSFKPGKYAGKKFCFEPTSFTVKADSVSKNAPPEFQNTKLMTRLTYTLDEIEGPFEVASDGSVNFKEEDGIDYAAVTVQLPGGERVPFLFTVKQLDASGKPDSFTGKFLVPSYRGSSFLDP 244          
BLAST of CX300180 vs. ExPASy Swiss-Prot
Match: PSBO_WHEAT (Oxygen-evolving enhancer protein 1, chloroplastic OS=Triticum aestivum GN=PSBO PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 1.266e-58
Identity = 111/136 (81.62%), Postives = 118/136 (86.76%), Query Frame = 1
Query:    1 GTANQCPTIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPENFGGEFLVPSYRGSSFLDP 408
            GTANQCPTIDGGVDSF FK GKY+ KKFCLEPTSFTVKAE + KN PP FQ TKLMTRLTYTLDE+EGP EV    T+KF EKDGIDYAAVTVQLPGGERV FLFT+KQLVA+GKPE+F   FLVPSYRGSSFLDP
Sbjct:  103 GTANQCPTIDGGVDSFPFKAGKYEMKKFCLEPTSFTVKAEGIQKNEPPRFQKTKLMTRLTYTLDEMEGPLEVRRRRTLKFEEKDGIDYAAVTVQLPGGERVAFLFTVKQLVATGKPESF-RPFLVPSYRGSSFLDP 237          
BLAST of CX300180 vs. ExPASy Swiss-Prot
Match: PSBO_VOLCA (Oxygen-evolving enhancer protein 1, chloroplastic OS=Volvox carteri GN=PSBO PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 7.718e-40
Identity = 81/137 (59.12%), Postives = 95/137 (69.34%), Query Frame = 1
Query:    1 GTANQCPTID-GGVDSFAFKPGKYQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPENFGGEFLVPSYRGSSFLDP 408
            G AN CP ++ G  D      G Y+ + FC+EPTSFTVK ESV K    +F  TKLMTRLTYTLD + G  +V  DG+ +  E+DGIDYAA TVQLPGGERV FLFTIKQ    G  +N  G+F+VPSYRGSSFLDP
Sbjct:   70 GIANTCPVLEKGSTDLSELSAGTYKLENFCIEPTSFTVKEESVFKGGETEFVKTKLMTRLTYTLDAMSGTLKVGSDGSAELKEEDGIDYAATTVQLPGGERVAFLFTIKQFDGKGTLDNIKGDFVVPSYRGSSFLDP 206          
The following BLAST results are available for this feature:
BLAST of CX300180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PSBO_TOBAC1.883e-7094.12Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_SOLTU1.350e-6891.18Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_SOLLC1.350e-6891.18Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_SPIOL1.949e-6788.24Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_PEA3.676e-6688.24Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_FRIAG5.308e-6583.82Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO2_ARATH1.182e-6484.56Oxygen-evolving enhancer protein 1-2, chloroplasti... [more]
PSBO1_ARATH5.869e-6483.09Oxygen-evolving enhancer protein 1-1, chloroplasti... [more]
PSBO_WHEAT1.266e-5881.62Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_VOLCA7.718e-4059.12Oxygen-evolving enhancer protein 1, chloroplastic ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07007B08SK SaltLeaf1 Citrus clementina cDNA clone C07007B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300180 ID=CX300180; Name=CX300180; organism=Citrus clementina; type=EST; length=410bp
GGAACTGCTAACCAGTGCCCAACCATTGATGGCGGAGTTGACTCTTTTGC
CTTCAAACCTGGCAAATACCAGGCTAAGAAGTTCTGCCTAGAACCAACTT
CCTTCACTGTCAAGGCTGAGAGTGTCAACAAGAATGCCCCACCAGATTTC
CAGAACACCAAGCTCATGACCCGCCTTACCTACACCCTTGACGAGATTGA
GGGACCTTTTGAAGTGTCCCCCGATGGCACCATTAAGTTTGTGGAGAAGG
ATGGAATTGACTATGCTGCTGTGACAGTTCAGCTGCCTGGAGGCGAGCGT
GTGCCCTTCCTTTTCACCATCAAACAATTGGTAGCATCAGGCAAGCCTGA
GAATTTCGGAGGAGAGTTCCTTGTACCATCATACCGTGGATCATCCTTCT
TGGACCCAAA
back to top