CX300236

Overview
NameCX300236
Unique NameCX300236
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length583
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300236 vs. ExPASy Swiss-Prot
Match: KCS21_ARATH (3-ketoacyl-CoA synthase 21 OS=Arabidopsis thaliana GN=KCS21 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.529e-59
Identity = 107/193 (55.44%), Postives = 142/193 (73.58%), Query Frame = 1
Query:    4 TYKNKLAIVVSTESMGPNWYCGREKSMMLSNILFRSGGCSMLLTNNRALKHKAILKLNCLVRTHFGSNDEAYECCMQVEDQQGHPGFRXXXXXXXXXXXXFTMNLQVLVPKILPLREQFGYVIQSYYESRIRKSTSSTKPEAVLGAGLNLKAGIEHFCLHPGGRAVIDGTGKGLGLDEYDLEPARMALHRFGN 582
            T +N LA+VVSTE+MGP+WYCG+++SMMLSN LFR+GG S+LLTN    K++A++KL  +VR H GS+DEAY CC+Q+ED+ GHPGF              T NLQVL+P++LP++E   Y I       +++ TS+ +  A  G GLNLK G++HFC+HPGGRA+I+G GK LGL E+D+EPARMALHRFGN
Sbjct:  188 TRENALALVVSTETMGPHWYCGKDRSMMLSNCLFRAGGSSVLLTNAARFKNQALMKLVTVVRAHVGSDDEAYSCCIQMEDRDGHPGFLLTKYLKKAAARALTKNLQVLLPRVLPVKELIRYAI----VRALKRRTSAKREPASSGIGLNLKTGLQHFCIHPGGRAIIEGVGKSLGLTEFDIEPARMALHRFGN 376          
BLAST of CX300236 vs. ExPASy Swiss-Prot
Match: KCS12_ARATH (3-ketoacyl-CoA synthase 12 OS=Arabidopsis thaliana GN=KCS12 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 5.089e-55
Identity = 101/199 (50.75%), Postives = 138/199 (69.35%), Query Frame = 1
Query:    1 RTYKNKLAIVVSTESMGPNWYCGREKSMMLSNILFRSGGCSMLLTNNRALKHKAILKLNCLVRTHFGSNDEAYECCMQVEDQQGHPGFRXXXXXXXXXXXXFTMNLQVLVPKILPLREQFGYVIQSYYES-RIR----KSTSSTKPEAVLGAGLNLKAGIEHFCLHPGGRAVIDGTGKGLGLDEYDLEPARMALHRFGN 582
            ++Y NKLA+V ++ES+ PNWY G  +SM+L+N LFRSGGC++LLTN R+L+ KA+ KL C+VRTH G+ +E+Y CC+Q ED+QG  GF             F  NL+V+ PKILP+ E   ++++   +  +IR    K +++  P   L AG+N K GIEHFC+H GG+AVIDG G  L L+EYD+EPARM LHRFGN
Sbjct:  183 KSYANKLALVATSESLSPNWYSGNNRSMILANCLFRSGGCAILLTNKRSLRKKAMFKLKCMVRTHHGAREESYNCCIQAEDEQGRVGFYLGKNLPKAATRAFVENLKVITPKILPVTELIRFMLKLLIKKIKIRQNPSKGSTNLPPGTPLKAGINFKTGIEHFCIHTGGKAVIDGIGHSLDLNEYDIEPARMTLHRFGN 381          
BLAST of CX300236 vs. ExPASy Swiss-Prot
Match: KCS3_ARATH (3-ketoacyl-CoA synthase 3 OS=Arabidopsis thaliana GN=KCS3 PE=2 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 6.221e-53
Identity = 101/200 (50.50%), Postives = 137/200 (68.50%), Query Frame = 1
Query:    1 RTYKNKLAIVVSTESMGPNWYCGREKSMMLSNILFRSGGCSMLLTNNRALKHKAILKLNCLVRTHFGSNDEAYECCMQVEDQQGHPGFRXXXXXXXXXXXXFTMNLQVLVPKILPLREQFGY----VIQSYYESRIRKSTSSTK--PEAVLGAGLNLKAGIEHFCLHPGGRAVIDGTGKGLGLDEYDLEPARMALHRFGN 582
            +TYKNKLA+VV++ES+ PNWY G  +SM+L+N LFRSGGC++LLTN R+L  +A+ KL CLVRTH G+ D+++  C+Q ED+ GH G              F  NL+V+ PKILP+ E   +    +++    S  + ST+ T+  P+A + AG+N K GI+HFC+H GG+AVID  G  L L+EYDLEPARM LHRFGN
Sbjct:  226 KTYKNKLALVVTSESLSPNWYSGNNRSMILANCLFRSGGCAVLLTNKRSLSRRAMFKLRCLVRTHHGARDDSFNACVQKEDELGHIGVHLDKTLPKAATRAFIDNLKVITPKILPVTELLRFMLCLLLKKLRSSPSKGSTNVTQAAPKAGVKAGINFKTGIDHFCIHTGGKAVIDAIGYSLDLNEYDLEPARMTLHRFGN 425          
BLAST of CX300236 vs. ExPASy Swiss-Prot
Match: KCS1_ARATH (3-ketoacyl-CoA synthase 1 OS=Arabidopsis thaliana GN=KCS1 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.220e-32
Identity = 75/190 (39.47%), Postives = 108/190 (56.84%), Query Frame = 1
Query:   13 NKLAIVVSTESMGPNWYCGREKSMMLSNILFRSGGCSMLLTNNRALKHKAILKLNCLVRTHFGSNDEAYECCMQVEDQQGHPGFRXXXXXXXXXXXXFTMNLQVLVPKILPLREQFGYVIQSYYESRIRKSTSSTKPEAVLGAGLNLKAGIEHFCLHPGGRAVIDGTGKGLGLDEYDLEPARMALHRFGN 582
            N  A+VVSTE++  NWY G ++SM+L N +FR GG ++LL+N R  + K+   L  +VRTH GS+D+ Y C  Q ED++G  G                 N+  L P +LPL EQ  ++I     S +++     K +  +    + K   EHFC+H GGRAV+D   K L L ++ +EP+RM LHRFGN
Sbjct:  277 NSYAVVVSTENITLNWYFGNDRSMLLCNCIFRMGGAAILLSNRRQDRKKSKYSLVNVVRTHKGSDDKNYNCVYQKEDERGTIGVSLARELMSVAGDALKTNITTLGPMVLPLSEQLMFLI-----SLVKRKMFKLKVKPYIP---DFKLAFEHFCIHAGGRAVLDEVQKNLDLKDWHMEPSRMTLHRFGN 458          
BLAST of CX300236 vs. ExPASy Swiss-Prot
Match: KCS7_ARATH (3-ketoacyl-CoA synthase 7 OS=Arabidopsis thaliana GN=KCS7 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.033e-31
Identity = 73/194 (37.63%), Postives = 111/194 (57.22%), Query Frame = 1
Query:    1 RTYKNKLAIVVSTESMGPNWYCGREKSMMLSNILFRSGGCSMLLTNNRALKHKAILKLNCLVRTHFGSNDEAYECCMQVEDQQGHPGFRXXXXXXXXXXXXFTMNLQVLVPKILPLREQFGYVIQSYYESRIRKSTSSTKPEAVLGAGLNLKAGIEHFCLHPGGRAVIDGTGKGLGLDEYDLEPARMALHRFGN 582
            + + + LA+V+S E++ PN Y G+ KSM+++N +FR GG ++LL+N +   HKA  KL  ++RTH GS+ E+YE  MQ  D++G  G                +N+  L P++LP  EQ  Y+I S+ + +         P        N K   EHFC+H GGRA+I+G  K L LD+ D+E +R  L+R+GN
Sbjct:  198 KIHGDSLALVLSMEAVSPNGYRGKCKSMLIANTIFRMGGAAILLSNRKQDSHKAKYKLQHIIRTHVGSDTESYESVMQQVDEEGKVGVALSKQLVRVASKALKINVVQLGPRVLPYSEQLKYII-SFIQRKWGMHKEIYTP--------NFKKAFEHFCIHAGGRAIIEGVEKHLKLDKEDVEASRSTLYRYGN 382          
BLAST of CX300236 vs. ExPASy Swiss-Prot
Match: KCS14_ARATH (Probable 3-ketoacyl-CoA synthase 14 OS=Arabidopsis thaliana GN=KCS14 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.033e-31
Identity = 73/190 (38.42%), Postives = 105/190 (55.26%), Query Frame = 1
Query:   13 NKLAIVVSTESMGPNWYCGREKSMMLSNILFRSGGCSMLLTNNRALKHKAILKLNCLVRTHFGSNDEAYECCMQVEDQQGHPGFRXXXXXXXXXXXXFTMNLQVLVPKILPLREQFGYVIQSYYESRIRKSTSSTKPEAVLGAGLNLKAGIEHFCLHPGGRAVIDGTGKGLGLDEYDLEPARMALHRFGN 582
            N  A++VSTE+M  + Y G ++SM++ N LFR GG +++L+N    + ++  +L  +VRTH GS+D+ Y C  Q ED +G  G                 NL  L P +LPL E+  +++        R   S   P+         K   +HFC+H GGRA++D   KGLGL E+DLEP+RM LHRFGN
Sbjct:  208 NTYAVIVSTENMTLSMYRGNDRSMLVPNCLFRVGGAAVMLSNRSQDRVRSKYELTHIVRTHKGSSDKHYTCAEQKEDSKGIVGVALSKELTVVAGDTLKTNLTALGPLVLPLSEKLRFILFLVKSKLFRLKVSPYVPD--------FKLCFKHFCIHAGGRALLDAVEKGLGLSEFDLEPSRMTLHRFGN 389          
BLAST of CX300236 vs. ExPASy Swiss-Prot
Match: KCS13_ARATH (3-ketoacyl-CoA synthase 13 OS=Arabidopsis thaliana GN=HIC PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.033e-31
Identity = 73/190 (38.42%), Postives = 105/190 (55.26%), Query Frame = 1
Query:   13 NKLAIVVSTESMGPNWYCGREKSMMLSNILFRSGGCSMLLTNNRALKHKAILKLNCLVRTHFGSNDEAYECCMQVEDQQGHPGFRXXXXXXXXXXXXFTMNLQVLVPKILPLREQFGYVIQSYYESRIRKSTSSTKPEAVLGAGLNLKAGIEHFCLHPGGRAVIDGTGKGLGLDEYDLEPARMALHRFGN 582
            N  A++VSTE+M  + Y G ++SM++ N LFR GG +++L+N    + ++  +L  +VRTH GS+D+ Y C  Q ED +G  G                 NL  L P +LPL E+  +++        R   S   P+         K   +HFC+H GGRA++D   KGLGL E+DLEP+RM LHRFGN
Sbjct:  215 NTYAVIVSTENMTLSMYRGNDRSMLVPNCLFRVGGAAVMLSNRSQDRVRSKYELTHIVRTHKGSSDKHYTCAEQKEDSKGIVGVALSKELTVVAGDSLKTNLTALGPLVLPLSEKLRFILFLVKSKLFRLKVSPYVPD--------FKLCFKHFCIHAGGRALLDAVEKGLGLSEFDLEPSRMTLHRFGN 396          
BLAST of CX300236 vs. ExPASy Swiss-Prot
Match: KCS5_ARATH (3-ketoacyl-CoA synthase 5 OS=Arabidopsis thaliana GN=KCS5 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.947e-30
Identity = 74/194 (38.14%), Postives = 108/194 (55.67%), Query Frame = 1
Query:    1 RTYKNKLAIVVSTESMGPNWYCGREKSMMLSNILFRSGGCSMLLTNNRALKHKAILKLNCLVRTHFGSNDEAYECCMQVEDQQGHPGFRXXXXXXXXXXXXFTMNLQVLVPKILPLREQFGYVIQSYYESRIRKSTSSTKPEAVLGAGLNLKAGIEHFCLHPGGRAVIDGTGKGLGLDEYDLEPARMALHRFGN 582
            + + N  AI++STE + PN+Y G E++M+L N LFR GG ++LL+N R+ + +A  KL  LVRTH G++D++Y C M+ ED+ G+ G                 N+  + P +LP  EQ       +  S I +   + K +  +    + K   EHFC+H GGRAVID   K L L    +E +RM LHRFGN
Sbjct:  235 QVHPNSNAIIISTEIITPNYYKGNERAMLLPNCLFRMGGAAILLSNRRSDRWRAKYKLCHLVRTHRGADDKSYNCVMEQEDKNGNVGINLSKDLMTIAGEALKANITTIGPLVLPASEQL-----LFLSSLIGRKIFNPKWKPYIP---DFKQAFEHFCIHAGGRAVIDELQKNLQLSGEHVEASRMTLHRFGN 420          
BLAST of CX300236 vs. ExPASy Swiss-Prot
Match: KCS20_ARATH (Probable 3-ketoacyl-CoA synthase 20 OS=Arabidopsis thaliana GN=KCS20 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.544e-30
Identity = 74/196 (37.76%), Postives = 106/196 (54.08%), Query Frame = 1
Query:    1 RTYKNKLAIVVSTESMGPNWYCGREKSMMLSNILFRSGGCSMLLTNNRALKHKAILKLNCLVRTHFGSNDEAYECCMQVEDQQGHPGFRXXXXXXXXXXXXFTMNLQVLVPKILPLREQFGYVIQSYY--ESRIRKSTSSTKPEAVLGAGLNLKAGIEHFCLHPGGRAVIDGTGKGLGLDEYDLEPARMALHRFGN 582
            + ++  LA++VSTE++  +WY G+++SM+L+N LFR G  ++L+++N   +  A  +L  +VR +   +D AY C  Q  D     G                MNL  L P +LP  EQF YVIQ     + +I +S SS  P        N K   EHFC+H GGRAVI      L L + D+EP++M LHRFGN
Sbjct:  202 QAHRGSLALIVSTEALNTHWYIGKDRSMLLTNCLFRMGAAAVLMSSNDHDRDNAKYELLHVVRKNKAKDDRAYRCIYQDIDSDEKQGVSITKDVISVAGDMLKMNLTSLGPLVLPYLEQFQYVIQHILCKKLKIYESNSSYTP--------NFKTAFEHFCIHTGGRAVIQAMEMNLKLTKVDIEPSKMTLHRFGN 389          
BLAST of CX300236 vs. ExPASy Swiss-Prot
Match: KCS8_ARATH (3-ketoacyl-CoA synthase 8 OS=Arabidopsis thaliana GN=KCS8 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.322e-30
Identity = 73/198 (36.87%), Postives = 108/198 (54.55%), Query Frame = 1
Query:    1 RTYKNKLAIVVSTESMGPNWYCGREKSMMLSNILFRSGGCSMLLTNNRALKHKAILKLNCLVRTHFGSNDEAYECCMQVEDQQGHPGFRXXXXXXXXXXXXFTMNLQVLVPKILPLREQFGYVI----QSYYESRIRKSTSSTKPEAVLGAGLNLKAGIEHFCLHPGGRAVIDGTGKGLGLDEYDLEPARMALHRFGN 582
            + ++N  AIVVSTE++  N Y G+ KSM+++N LFR GG ++LL+N    +++A  +L   VR H GS+D ++EC  Q ED+ G  G                +N+  L P +LPL+E+  + I    + Y++  +R  T             + K   EHFC+H GGRA+ID   K L L    +E +RM LHRFGN
Sbjct:  228 QVHRNTYAIVVSTENITQNLYLGKNKSMLVTNCLFRVGGAAVLLSNRSRDRNRAKYELVHTVRIHTGSDDRSFECATQEEDEDGIIGVTLTKNLPMVAARTLKINIATLGPLVLPLKEKLAFFITFVKKKYFKPELRNYTP------------DFKLAFEHFCIHAGGRALIDELEKNLKLSPLHVEASRMTLHRFGN 413          
The following BLAST results are available for this feature:
BLAST of CX300236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
KCS21_ARATH1.529e-5955.443-ketoacyl-CoA synthase 21 OS=Arabidopsis thaliana... [more]
KCS12_ARATH5.089e-5550.753-ketoacyl-CoA synthase 12 OS=Arabidopsis thaliana... [more]
KCS3_ARATH6.221e-5350.503-ketoacyl-CoA synthase 3 OS=Arabidopsis thaliana ... [more]
KCS1_ARATH1.220e-3239.473-ketoacyl-CoA synthase 1 OS=Arabidopsis thaliana ... [more]
KCS7_ARATH1.033e-3137.633-ketoacyl-CoA synthase 7 OS=Arabidopsis thaliana ... [more]
KCS14_ARATH1.033e-3138.42Probable 3-ketoacyl-CoA synthase 14 OS=Arabidopsis... [more]
KCS13_ARATH1.033e-3138.423-ketoacyl-CoA synthase 13 OS=Arabidopsis thaliana... [more]
KCS5_ARATH1.947e-3038.143-ketoacyl-CoA synthase 5 OS=Arabidopsis thaliana ... [more]
KCS20_ARATH2.544e-3037.76Probable 3-ketoacyl-CoA synthase 20 OS=Arabidopsis... [more]
KCS8_ARATH3.322e-3036.873-ketoacyl-CoA synthase 8 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC07007G06SK SaltLeaf1 Citrus clementina cDNA clone C07007G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300236 ID=CX300236; Name=CX300236; organism=Citrus clementina; type=EST; length=583bp
AGAACCTACAAAAACAAGCTTGCAATTGTTGTGAGCACAGAGTCCATGGG
ACCTAACTGGTATTGCGGCAGAGAAAAATCTATGATGCTTTCGAATATTT
TGTTCCGCTCAGGTGGGTGCTCAATGCTTTTGACGAACAACAGAGCGTTA
AAGCACAAAGCAATCTTGAAGTTGAACTGTTTAGTGAGAACCCATTTTGG
CTCAAACGATGAAGCTTATGAATGCTGTATGCAAGTTGAAGATCAACAAG
GGCACCCCGGCTTTCGCCTGACGAAAAAGCTACCAAAAGCTGCAGCTCTG
GCTTTCACAATGAATCTCCAGGTTCTTGTTCCGAAAATATTGCCTCTCAG
AGAGCAATTTGGGTATGTAATCCAATCCTATTATGAAAGCAGAATCAGAA
AAAGCACTTCTAGTACTAAACCTGAAGCAGTACTCGGAGCAGGGTTGAAC
CTGAAAGCTGGAATTGAGCATTTCTGCTTACATCCTGGAGGAAGAGCTGT
GATTGATGGGACTGGAAAGGGCTTGGGATTGGATGAATACGATCTTGAGC
CAGCAAGAATGGCGCTTCATCGATTCGGAAACA
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