CX300444

Overview
NameCX300444
Unique NameCX300444
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:489..936. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 3.015e-43
Identity = 77/134 (57.46%), Postives = 95/134 (70.90%), Query Frame = 3
Query:    9 YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 410
            YYGRGP+QL+WNYNY  C                 ATD VLSFK+A+WFWMT Q PKPSCH+V+T  W+PSA D  AGRLPGYG+ TN++NGG+ECG+G N  V +R+GFF  +CG  G+  G NLDCY+Q+PF
Sbjct:  111 YYGRGPLQLSWNYNYGPCGEALRVNLLGNPDLV--ATDRVLSFKTALWFWMTPQAPKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDCYNQRPF 242          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 3.015e-43
Identity = 79/135 (58.52%), Postives = 96/135 (71.11%), Query Frame = 3
Query:    6 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 410
            +YYGRGPIQ++WNYNY +C                 ATDPV+SFK+A+WFWMT Q PKPSCH+VIT  W PS+ D  AGRLPGYG  TNIINGG+ECG+G +  V++RIGF+  +C  FGI  G NLDCY Q+PF
Sbjct:  175 QYYGRGPIQISWNYNYGQCGRAIGVDLLNNPDLV--ATDPVISFKTALWFWMTPQSPKPSCHDVITGGWTPSSADRAAGRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGIGYGDNLDCYSQRPF 307          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 5.142e-43
Identity = 76/135 (56.30%), Postives = 93/135 (68.89%), Query Frame = 3
Query:    6 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 410
            +Y+GRGP+QLTWNYNY +C                 ATDP +SFKSA WFWMT Q PKPSCH+VI   W PS +D  AGR+PG+GL TNIINGG+ECGQGWN  V +RIGF+  +C   G+  G NLDCY+Q+ +
Sbjct:  180 QYFGRGPMQLTWNYNYGQCGRAIGVDLLNNPDLL--ATDPTISFKSAFWFWMTPQSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTLGVGYGNNLDCYNQRSY 312          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 1.146e-42
Identity = 77/135 (57.04%), Postives = 95/135 (70.37%), Query Frame = 3
Query:    6 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 410
            +YYGRGP+QL+WNYNY  C                 A D V++FK+AIWFWMTAQPPKPSCH VI  +W+PS  D  AGRLPGYG+ TNIINGG+ECG+G +  V +RIGF+  +C  FG+ PG NLDCY+Q+ F
Sbjct:  194 RYYGRGPMQLSWNYNYGLCGRAIGVDLLNNPDLV--ANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGGNLDCYNQRSF 326          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 2.552e-42
Identity = 74/135 (54.81%), Postives = 93/135 (68.89%), Query Frame = 3
Query:    6 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 410
            +Y+GRGP+QL+WNYNY +C                 ++DP +SFKSA WFWMT Q PKPSCH VI   W PS++D  AGR+PGYG+ TNIINGG+ECG+GWN  V +RIGF+  +C   G+  G NLDCY+Q PF
Sbjct:  183 QYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLL--SSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRVPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPF 315          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 7.426e-42
Identity = 78/135 (57.78%), Postives = 93/135 (68.89%), Query Frame = 3
Query:    6 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 410
            +YYGRGPIQ++WNYNY +C                 ATD V+SFKSA+WFWMTAQ PKPS H+VIT  W PS+ DV A RLPGYG  TNIINGG+ECG+G +  V++RIGFF  +C   G+  G NLDCY Q PF
Sbjct:  183 QYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLV--ATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPF 315          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 7.426e-42
Identity = 78/135 (57.78%), Postives = 93/135 (68.89%), Query Frame = 3
Query:    6 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 410
            +YYGRGPIQ++WNYNY +C                 ATD V+SFKSA+WFWMTAQ PKPS H+VIT  W PS+ DV A RLPGYG  TNIINGG+ECG+G +  V++RIGFF  +C   G+  G NLDCY Q PF
Sbjct:  182 QYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLV--ATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPF 314          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.267e-41
Identity = 77/135 (57.04%), Postives = 95/135 (70.37%), Query Frame = 3
Query:    6 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 410
            KY+GRGPIQL++NYNY                    A+DPV+SFK+A+WFWMT Q PKPSCH+VIT +W PS+ D+ AGR+PGYG+ TNIINGG+ECG G +D V NRIGF+  +C   GI  G NLDCY Q+PF
Sbjct:  194 KYFGRGPIQLSYNYNY--GPAGEAIGEDLLNNPELVASDPVVSFKTALWFWMTPQSPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRVANRIGFYQRYCDVLGIGYGSNLDCYDQRPF 326          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 3.685e-41
Identity = 73/135 (54.07%), Postives = 91/135 (67.41%), Query Frame = 3
Query:    6 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 410
            +Y+GRGP+QL+WNYNY +C                 ++DP +SFKSA WFWMT Q PKPSCH VI   W PS++D  AGR  GYG+ TNIINGG+ECG+GWN  V +RIGF+  +C   G+  G NLDCY+Q PF
Sbjct:  161 QYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLL--SSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRATGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPF 293          
BLAST of CX300444 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 6.286e-41
Identity = 73/137 (53.28%), Postives = 94/137 (68.61%), Query Frame = 3
Query:    9 YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFCPI 419
            YYGRGP+QL+WNYNY +C                 + DPV++FK+AIWFWMT Q PKPSCH VI  +W+PS  D  AGR+PGYG+ TNIINGG+ECG+G +  V +RIGF+  +C   G+ PG NLDCY+Q+ F  +
Sbjct:  180 YYGRGPMQLSWNYNYGQCGRAIGSDLLNNPDLV--SNDPVIAFKAAIWFWMTPQSPKPSCHAVIVGQWQPSDADRAAGRVPGYGVITNIINGGLECGRGQDARVADRIGFYQRYCNILGVNPGGNLDCYNQRSFASV 314          
The following BLAST results are available for this feature:
BLAST of CX300444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIT_CARPA3.015e-4357.46Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI2_PEA3.015e-4358.52Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI1_THECC5.142e-4356.30Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHIB_ARATH1.146e-4257.04Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI1_GOSHI2.552e-4254.81Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHIT_PHAVU7.426e-4257.78Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI5_PHAVU7.426e-4257.78Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI9_ORYSJ1.267e-4157.04Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_GOSHI3.685e-4154.07Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI2_BRANA6.286e-4153.28Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC07010C10SK SaltLeaf1 Citrus clementina cDNA clone C07010C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300444 ID=CX300444; Name=CX300444; organism=Citrus clementina; type=EST; length=448bp
GAGGGAAGTACTATGGCCGAGGTCCAATTCAACTCACTTGGAATTACAAT
TACTTACGGTGCGGAGAAGACCTAGGGCTAGGAGAGGAGTTGTTGAACAA
TCCAGACCTTCTTGCTACTGATCCAGTACTATCATTCAAGTCAGCAATCT
GGTTCTGGATGACCGCACAGCCACCAAAGCCATCATGCCACGAAGTCATT
ACCGACGAATGGAAACCATCAGCAAATGACGTAAACGCCGGCCGGCTTCC
GGGATACGGTCTAACCACAAATATAATCAACGGTGGAATTGAATGTGGCC
AAGGTTGGAATGACGCTGTACGTAACCGTATTGGGTTCTTTAGCACTTTC
TGTGGCAAGTTTGGGATTCAGCCTGGTTACAATCTTGATTGCTACCACCA
ACAGCCTTTTTGCCCTATTCTGATGGCACGATCTATGTGATCATCATG
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