CX300544
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRIA_SPIOL (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Spinacia oleracea GN=petC PE=1 SV=2) HSP 1 Score: 214.157 bits (544), Expect = 5.020e-60 Identity = 94/108 (87.04%), Postives = 104/108 (96.30%), Query Frame = -2 Query: 308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 631 TH PGDR LT+GLKGDPTYLVVE DKTLA++GINAVCTHLGCVVP+N+AENKFICPCHGSQYNNQGRVVRGPAPLSLALAH ++++GKVVFVPWTETDFRTGEAPWW+ Sbjct: 122 THAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHCDVDDGKVVFVPWTETDFRTGEAPWWS 229 HSP 2 Score: 36.965 bits (84), Expect = 5.020e-60 Identity = 16/24 (66.67%), Postives = 19/24 (79.17%), Query Frame = -3 Query: 616 GTTAKDAIGNDIIAADWLTRTALG 687 GT AKDA+GND+IAA+WL A G Sbjct: 103 GTIAKDALGNDVIAAEWLKTHAPG 126
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRIA_ARATH (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Arabidopsis thaliana GN=petC PE=1 SV=1) HSP 1 Score: 210.69 bits (535), Expect = 1.579e-58 Identity = 95/109 (87.16%), Postives = 102/109 (93.58%), Query Frame = -2 Query: 308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWWA 631 THGPGDR LT+GLKGDPTYLVVE DKTLA+YGINAVCTHLGCVVPWN AENKF+CPCHGSQYN QGRVVRGPAPLSLALAHA+I E GKV+FVPW ETDFRTG+APWW+ Sbjct: 121 THGPGDRTLTQGLKGDPTYLVVENDKTLATYGINAVCTHLGCVVPWNKAENKFLCPCHGSQYNAQGRVVRGPAPLSLALAHADIDEAGKVLFVPWVETDFRTGDAPWWS 229 HSP 2 Score: 35.4242 bits (80), Expect = 1.579e-58 Identity = 13/18 (72.22%), Postives = 17/18 (94.44%), Query Frame = -3 Query: 634 GTTAKDAIGNDIIAADWL 687 GT AKDA+GND++AA+WL Sbjct: 102 GTPAKDALGNDVVAAEWL 119
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRIB_TOBAC (Cytochrome b6-f complex iron-sulfur subunit 2, chloroplastic OS=Nicotiana tabacum GN=petC2 PE=2 SV=1) HSP 1 Score: 211.46 bits (537), Expect = 1.580e-58 Identity = 95/108 (87.96%), Postives = 103/108 (95.37%), Query Frame = -2 Query: 308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 631 TH PG+R LT+GLKGDPTYLVVE D TLA+YGINAVCTHLGCVVP+N+AENKFICPCHGSQYNNQGRVVRGPAPLSLALAHA+I++GKVVFVPW ETDFRTGEAPWWA Sbjct: 121 THPPGNRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHADIDDGKVVFVPWVETDFRTGEAPWWA 228 HSP 2 Score: 34.6538 bits (78), Expect = 1.580e-58 Identity = 13/18 (72.22%), Postives = 17/18 (94.44%), Query Frame = -3 Query: 634 GTTAKDAIGNDIIAADWL 687 GT AKDA+GND+IA++WL Sbjct: 102 GTPAKDALGNDVIASEWL 119
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRIA_SOLTU (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Solanum tuberosum GN=petC PE=2 SV=1) HSP 1 Score: 211.846 bits (538), Expect = 5.950e-58 Identity = 93/108 (86.11%), Postives = 102/108 (94.44%), Query Frame = -2 Query: 308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 631 TH PG R LT+GLKGDPTYLVVE D TLA+YGINAVCTHLGCVVPWN+AENKFICPCHGSQYNNQG+VVRGPAPLSLALAHA+I++GKVVFVPW ETDFRTG++PWWA Sbjct: 123 THSPGTRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPWNTAENKFICPCHGSQYNNQGKVVRGPAPLSLALAHADIDDGKVVFVPWVETDFRTGDSPWWA 230 HSP 2 Score: 32.3426 bits (72), Expect = 5.950e-58 Identity = 13/25 (52.00%), Postives = 17/25 (68.00%), Query Frame = -3 Query: 613 GTTAKDAIGNDIIAADWLTRTALGT 687 GT AKDA GND++ +WL + GT Sbjct: 104 GTIAKDANGNDVVVTEWLKTHSPGT 128
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRIA_TOBAC (Cytochrome b6-f complex iron-sulfur subunit 1, chloroplastic OS=Nicotiana tabacum GN=petC1 PE=2 SV=2) HSP 1 Score: 209.149 bits (531), Expect = 7.758e-58 Identity = 94/108 (87.04%), Postives = 102/108 (94.44%), Query Frame = -2 Query: 308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 631 TH PG+R LT+GLKGDPTYLVVE D TLA+YGINAVCTHLGCVVP+N+AENKFICPCHGSQYNNQGRVVRGPAPLSLALAHA+I++GKVVFVPW ETDFRTGE PWWA Sbjct: 121 THPPGNRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHADIDDGKVVFVPWVETDFRTGEDPWWA 228 HSP 2 Score: 34.6538 bits (78), Expect = 7.758e-58 Identity = 13/18 (72.22%), Postives = 17/18 (94.44%), Query Frame = -3 Query: 634 GTTAKDAIGNDIIAADWL 687 GT AKDA+GND+IA++WL Sbjct: 102 GTPAKDALGNDVIASEWL 119
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRIA_ORYSJ (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Oryza sativa subsp. japonica GN=petC PE=1 SV=1) HSP 1 Score: 213.772 bits (543), Expect = 1.319e-57 Identity = 93/108 (86.11%), Postives = 102/108 (94.44%), Query Frame = -2 Query: 308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 631 THGP DR LT+GLKGDPTYLVVE DKTLA+YGINAVCTHLGCVVPWN+AENKFICPCHGSQYNNQGRVVRGPAPLSLAL HA++++GKV+FVPW ETDFRTG+ PWWA Sbjct: 118 THGPNDRTLTQGLKGDPTYLVVEADKTLATYGINAVCTHLGCVVPWNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALVHADVDDGKVLFVPWVETDFRTGDNPWWA 225 HSP 2 Score: 29.261 bits (64), Expect = 1.319e-57 Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = -3 Query: 634 GTTAKDAIGNDIIAADWL 687 G AKD +GND++A +WL Sbjct: 99 GQVAKDKLGNDVLAEEWL 116
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRIA_WHEAT (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Triticum aestivum GN=petC PE=2 SV=1) HSP 1 Score: 209.92 bits (533), Expect = 1.101e-56 Identity = 90/107 (84.11%), Postives = 100/107 (93.46%), Query Frame = -2 Query: 311 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 631 THGP DR L +GLKGDPTYLVVE DKTLA+YGINAVCTHLGCVVPWN+AENKF+CPCHGSQYNNQG+VVRGPAPLSLAL HA++++GKVVFVPW ETDFRTG+ PWW Sbjct: 115 THGPNDRTLAQGLKGDPTYLVVESDKTLATYGINAVCTHLGCVVPWNAAENKFLCPCHGSQYNNQGKVVRGPAPLSLALVHADVDDGKVVFVPWVETDFRTGDNPWW 221 HSP 2 Score: 30.0314 bits (66), Expect = 1.101e-56 Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = -3 Query: 634 GTTAKDAIGNDIIAADWL 687 G AKD +GNDI+ DWL Sbjct: 96 GVAAKDKLGNDILVEDWL 113
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRIA_PEA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Pisum sativum GN=petC PE=2 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 1.871e-56 Identity = 91/110 (82.73%), Postives = 102/110 (92.73%), Query Frame = -2 Query: 308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHAN--IENGKVVFVPWTETDFRTGEAPWWA 631 TH PGDR LT+GLKGDPTYLVVEKD+TLA++ INAVCTHLGCVVP+N AENKFICPCHGSQYN+QGRVVRGPAPLSLALAH + +E+GKVVFVPW ETDFRTG+APWW+ Sbjct: 121 THAPGDRTLTQGLKGDPTYLVVEKDRTLATFAINAVCTHLGCVVPFNQAENKFICPCHGSQYNDQGRVVRGPAPLSLALAHCDVGVEDGKVVFVPWVETDFRTGDAPWWS 230 HSP 2 Score: 35.8094 bits (81), Expect = 1.871e-56 Identity = 14/24 (58.33%), Postives = 18/24 (75.00%), Query Frame = -3 Query: 616 GTTAKDAIGNDIIAADWLTRTALG 687 GT AKDA+GND++A +WL A G Sbjct: 102 GTVAKDAVGNDVVATEWLKTHAPG 125
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRIA_FRIAG (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Fritillaria agrestis GN=petC PE=2 SV=1) HSP 1 Score: 204.912 bits (520), Expect = 5.404e-56 Identity = 90/109 (82.57%), Postives = 100/109 (91.74%), Query Frame = -2 Query: 308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWWA 631 THGPGDR L +GL+GDPTYLVVE D++LA+YGINAVCTHLGCVVPWN AENKF+CPCHGSQYNNQG+VVRGPAPLSLAL+H +I E GKVVFVPW ETDFRTGE PWW+ Sbjct: 122 THGPGDRTLAQGLRGDPTYLVVENDRSLATYGINAVCTHLGCVVPWNKAENKFLCPCHGSQYNNQGKVVRGPAPLSLALSHCDISEEGKVVFVPWVETDFRTGENPWWS 230 HSP 2 Score: 32.7278 bits (73), Expect = 5.404e-56 Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = -3 Query: 634 GTTAKDAIGNDIIAADWL 687 G AKDA+GNDI+AA WL Sbjct: 103 GIVAKDAVGNDIVAAAWL 120
BLAST of CX300544 vs. ExPASy Swiss-Prot
Match: UCRI_MICAN (Cytochrome b6-f complex iron-sulfur subunit OS=Microcystis aeruginosa (strain NIES-843) GN=petC PE=3 SV=1) HSP 1 Score: 192.971 bits (489), Expect = 7.569e-52 Identity = 85/109 (77.98%), Postives = 98/109 (89.91%), Query Frame = -2 Query: 308 THGPGDRXLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWWA 631 +H GDR L +GLKGDPTYLVV++DKTLA+YGINAVCTHLGCVVPWN++E KF+CPCHGSQYN +G+VVRGPAPLSLALAHAN+ +N KVVF WTETDFRTGE PWW+ Sbjct: 71 SHNAGDRTLAQGLKGDPTYLVVQEDKTLANYGINAVCTHLGCVVPWNASEEKFMCPCHGSQYNAEGKVVRGPAPLSLALAHANVTDNDKVVFSTWTETDFRTGEEPWWS 179 HSP 2 Score: 30.8018 bits (68), Expect = 7.569e-52 Identity = 12/19 (63.16%), Postives = 16/19 (84.21%), Query Frame = -3 Query: 631 GTTAKDAIGNDIIAADWLT 687 G TAKDA+GND+I + +LT Sbjct: 52 GVTAKDALGNDVIVSQFLT 70 The following BLAST results are available for this feature:
BLAST of CX300544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 55
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX300544 ID=CX300544; Name=CX300544; organism=Citrus clementina; type=EST; length=698bpback to top |