CX300596

Overview
NameCX300596
Unique NameCX300596
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length492
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: AL2B4_ARATH (Aldehyde dehydrogenase family 2 member B4, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B4 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 5.728e-25
Identity = 50/65 (76.92%), Postives = 59/65 (90.77%), Query Frame = 1
Query:    1 KTRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSLNALL 195
            +T++GLAAGVFTK+ DTAN ++RAL+AGTVW NC+DVFDAAIPFGGYK+SG GREKGIYSLN  L
Sbjct:  459 ETKYGLAAGVFTKNLDTANRVSRALKAGTVWVNCFDVFDAAIPFGGYKMSGNGREKGIYSLNNYL 523          

HSP 2 Score: 24.6386 bits (52), Expect = 5.728e-25
Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = 3
Query:  195 LQVKAVVQPVKNPAWL 242
            LQ+KAVV  +  PAW+
Sbjct:  523 LQIKAVVTALNKPAWI 538          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: AL2B7_ARATH (Aldehyde dehydrogenase family 2 member B7, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B7 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 9.703e-25
Identity = 47/64 (73.44%), Postives = 56/64 (87.50%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSLNALL 195
            +R+GLAAGVFT++ DTA+ + RALR GTVW NC+DV DA+IPFGGYK+SGIGREKGIYSLN  L
Sbjct:  456 SRYGLAAGVFTQNLDTAHRLMRALRVGTVWINCFDVLDASIPFGGYKMSGIGREKGIYSLNNYL 519          

HSP 2 Score: 30.0314 bits (66), Expect = 9.703e-25
Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = 3
Query:  195 LQVKAVVQPVKNPAWL 242
            LQVKAVV  +KNPAWL
Sbjct:  519 LQVKAVVTSLKNPAWL 534          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: ALDH2_PIG (Aldehyde dehydrogenase, mitochondrial OS=Sus scrofa GN=ALDH2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.687e-17
Identity = 41/62 (66.13%), Postives = 48/62 (77.42%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSLNA 189
            +++GLAA VFTK  D AN +++AL+AGTVW NCYDVF A  PFGGYKLSG GRE G Y L A
Sbjct:  444 SKYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKLSGSGRELGEYGLQA 505          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: ALDH2_BOVIN (Aldehyde dehydrogenase, mitochondrial OS=Bos taurus GN=ALDH2 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.687e-17
Identity = 41/62 (66.13%), Postives = 48/62 (77.42%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSLNA 189
            +++GLAA VFTK  D AN +++AL+AGTVW NCYDVF A  PFGGYKLSG GRE G Y L A
Sbjct:  443 SKYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKLSGSGRELGEYGLQA 504          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: ALDH2_RAT (Aldehyde dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Aldh2 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.758e-17
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSLNA 189
            +++GLAA VFTK  D AN +++AL+AGTVW NCYDVF A  PFGGYK+SG GRE G Y L A
Sbjct:  442 SKYGLAAAVFTKDLDKANYLSQALQAGTVWINCYDVFGAQSPFGGYKMSGSGRELGEYGLQA 503          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: ALDH2_MOUSE (Aldehyde dehydrogenase, mitochondrial OS=Mus musculus GN=Aldh2 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.758e-17
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSLNA 189
            +++GLAA VFTK  D AN +++AL+AGTVW NCYDVF A  PFGGYK+SG GRE G Y L A
Sbjct:  442 SKYGLAAAVFTKDLDKANYLSQALQAGTVWINCYDVFGAQSPFGGYKMSGSGRELGEYGLQA 503          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: ALDH2_MESAU (Aldehyde dehydrogenase, mitochondrial OS=Mesocricetus auratus GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.758e-17
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSLNA 189
            +++GLAA VFTK  D AN +++AL+AGTVW NCYDVF A  PFGGYK+SG GRE G Y L A
Sbjct:  423 SKYGLAAAVFTKDLDKANYLSQALQAGTVWINCYDVFGAQSPFGGYKMSGSGRELGEYGLQA 484          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: ALDH2_HORSE (Aldehyde dehydrogenase, mitochondrial OS=Equus caballus GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.908e-17
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 1
Query:    4 TRFGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSLNA 189
            +++GLAA VFTK  D AN +++AL+AGTVW NCYDVF A  PFGGYK+SG GRE G Y L A
Sbjct:  423 SKYGLAAAVFTKDLDKANYLSQALQAGTVWINCYDVFGAQSPFGGYKMSGNGRELGEYGLQA 484          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: ALDH2_HUMAN (Aldehyde dehydrogenase, mitochondrial OS=Homo sapiens GN=ALDH2 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 6.410e-17
Identity = 40/60 (66.67%), Postives = 46/60 (76.67%), Query Frame = 1
Query:   10 FGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSLNA 189
            +GLAA VFTK  D AN +++AL+AGTVW NCYDVF A  PFGGYK+SG GRE G Y L A
Sbjct:  442 YGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGRELGEYGLQA 501          
BLAST of CX300596 vs. ExPASy Swiss-Prot
Match: ALDH2_PONAB (Aldehyde dehydrogenase, mitochondrial OS=Pongo abelii GN=ALDH2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.436e-16
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 1
Query:   10 FGLAAGVFTKSADTANTMTRALRAGTVWTNCYDVFDAAIPFGGYKLSGIGREKGIYSLNA 189
            +GLAA VFTK  D AN +++AL+AGTVW NCY+VF A  PFGGYK+SG GRE G Y L A
Sbjct:  442 YGLAAAVFTKDLDKANYLSQALQAGTVWVNCYNVFGAQSPFGGYKMSGSGRELGEYGLQA 501          
The following BLAST results are available for this feature:
BLAST of CX300596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
AL2B4_ARATH5.728e-2576.92Aldehyde dehydrogenase family 2 member B4, mitocho... [more]
AL2B7_ARATH9.703e-2573.44Aldehyde dehydrogenase family 2 member B7, mitocho... [more]
ALDH2_PIG1.687e-1766.13Aldehyde dehydrogenase, mitochondrial OS=Sus scrof... [more]
ALDH2_BOVIN1.687e-1766.13Aldehyde dehydrogenase, mitochondrial OS=Bos tauru... [more]
ALDH2_RAT3.758e-1764.52Aldehyde dehydrogenase, mitochondrial OS=Rattus no... [more]
ALDH2_MOUSE3.758e-1764.52Aldehyde dehydrogenase, mitochondrial OS=Mus muscu... [more]
ALDH2_MESAU3.758e-1764.52Aldehyde dehydrogenase, mitochondrial OS=Mesocrice... [more]
ALDH2_HORSE4.908e-1764.52Aldehyde dehydrogenase, mitochondrial OS=Equus cab... [more]
ALDH2_HUMAN6.410e-1766.67Aldehyde dehydrogenase, mitochondrial OS=Homo sapi... [more]
ALDH2_PONAB2.436e-1665.00Aldehyde dehydrogenase, mitochondrial OS=Pongo abe... [more]

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Properties
Property NameValue
Genbank descriptionC07012A12SK SaltLeaf1 Citrus clementina cDNA clone C07012A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300596 ID=CX300596; Name=CX300596; organism=Citrus clementina; type=EST; length=492bp
AAAACACGCTTTGGTCTAGCTGCTGGGGTTTTCACCAAGAGTGCAGACAC
TGCTAACACCATGACGCGTGCACTGAGAGCTGGGACTGTATGGACTAACT
GCTACGACGTGTTTGATGCTGCTATTCCTTTCGGTGGGTACAAGCTGAGT
GGCATAGGCCGGGAAAAGGGAATTTACAGCCTTAACGCTTTACTTTGCAA
GTAAAGGCCGTCGTTCAACCTGTGAAGAACCCAGCATGGCTCTAGTTTCC
TGAAGTTCCCCCTCCCTTTTAATCTGTGTTTATGAATAAGGACAGCGTGC
AAATATCAGCTTGTAATTATGGAGCAAATGGATAATCTTACTTTTAAAAG
AACTTTACTTTTCTTTTTGTGCTGTAAGCACAATGATGCATGTCTGTTGA
TCAAGGCAGCTTTCACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAACCTCGAGGGGGGGCCCGGT
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