CX300611
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2) HSP 1 Score: 140.969 bits (354), Expect = 3.519e-67 Identity = 68/89 (76.40%), Postives = 71/89 (79.78%), Query Frame = 3 Query: 3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269 LGCVFPEILS+ GVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWACQVVL GFVEGYR+ AFDPLG Sbjct: 110 LGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLG 198 HSP 2 Score: 134.035 bits (336), Expect = 3.519e-67 Identity = 62/66 (93.94%), Postives = 65/66 (98.48%), Query Frame = 1 Query: 274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471 ADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL+DH+ADPVANNAWAYATNFVPGK Sbjct: 200 ADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 1.327e-66 Identity = 67/89 (75.28%), Postives = 70/89 (78.65%), Query Frame = 3 Query: 3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269 LGCVFPEILS+ GVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVL GFVEGYR+ AFDPLG Sbjct: 108 LGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLG 196 HSP 2 Score: 135.191 bits (339), Expect = 1.327e-66 Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 1 Query: 274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471 ADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL+DH+ADPVANNAWAYATNFVPGK Sbjct: 198 ADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 1.327e-66 Identity = 67/89 (75.28%), Postives = 70/89 (78.65%), Query Frame = 3 Query: 3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269 LGCVFPEILS+ GVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVL GFVEGYR+ AFDPLG Sbjct: 108 LGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLG 196 HSP 2 Score: 135.191 bits (339), Expect = 1.327e-66 Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 1 Query: 274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471 ADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL+DH+ADPVANNAWAYATNFVPGK Sbjct: 198 ADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 1.447e-65 Identity = 67/89 (75.28%), Postives = 71/89 (79.78%), Query Frame = 3 Query: 3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269 LGCVFPEILS+ GVKFGEAVWFKAG+QIFSEGGLDYLGNPNL+HAQSILAIWACQVVL GFVEGYR+ AFDPLG Sbjct: 110 LGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLG 198 HSP 2 Score: 129.028 bits (323), Expect = 1.447e-65 Identity = 61/66 (92.42%), Postives = 63/66 (95.45%), Query Frame = 1 Query: 274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471 ADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DHI DPVANNAWAYATNFVPGK Sbjct: 200 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYATNFVPGK 265
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 4.183e-65 Identity = 66/89 (74.16%), Postives = 69/89 (77.53%), Query Frame = 3 Query: 3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269 LGCVFPEILS+ GV FGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVL GFVEGYR+ AFDPLG Sbjct: 110 LGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLG 198 HSP 2 Score: 132.88 bits (333), Expect = 4.183e-65 Identity = 61/66 (92.42%), Postives = 65/66 (98.48%), Query Frame = 1 Query: 274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471 ADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENLYDH+ADPVANNAWA+ATNFVPGK Sbjct: 200 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATNFVPGK 265
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 9.275e-65 Identity = 64/89 (71.91%), Postives = 69/89 (77.53%), Query Frame = 3 Query: 3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269 LGCVFPEILS+ GVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILA+WA QVVL G +EGYR+ AFDPLG Sbjct: 110 LGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLG 198 HSP 2 Score: 132.88 bits (333), Expect = 9.275e-65 Identity = 61/66 (92.42%), Postives = 65/66 (98.48%), Query Frame = 1 Query: 274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471 ADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL+DH+ADPVANNAWAYATNFVPGK Sbjct: 200 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 1.578e-64 Identity = 66/89 (74.16%), Postives = 69/89 (77.53%), Query Frame = 3 Query: 3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269 LGCVFPEILS+ GV FGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVL GFVEGYR+ AFDPLG Sbjct: 82 LGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLG 170 HSP 2 Score: 131.339 bits (329), Expect = 1.578e-64 Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 1 Query: 274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471 ADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DHIADPVANNAWAYATNFVPGK Sbjct: 172 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 2.681e-64 Identity = 63/89 (70.79%), Postives = 69/89 (77.53%), Query Frame = 3 Query: 3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269 LGCVFPE+L++ G+KFGEAVWFKAGAQIFSEGGLDY GNPNLIHAQSILAIWACQVVL G +EGYR+ AFDPLG Sbjct: 111 LGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLG 199 HSP 2 Score: 130.954 bits (328), Expect = 2.681e-64 Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 1 Query: 274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471 ADDP+ AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENLYDH+ADPVANNAWAYATNFVPGK Sbjct: 201 ADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 2.681e-64 Identity = 61/66 (92.42%), Postives = 65/66 (98.48%), Query Frame = 1 Query: 274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471 ADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI+NLYDH+ADPVANNAWA+ATNFVPG+ Sbjct: 200 ADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265 HSP 2 Score: 132.494 bits (332), Expect = 2.681e-64 Identity = 65/96 (67.71%), Postives = 70/96 (72.92%), Query Frame = 3 Query: 3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGFG**PRS 290 LGC FPE+L + GVKFGEAVWFKAG+QIF+EGGLDYLGNPNLIHAQSILAIWA QVVL GFVEGYR+ AFDPLG P S Sbjct: 110 LGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDS 205
BLAST of CX300611 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 1.011e-63 Identity = 65/89 (73.03%), Postives = 70/89 (78.65%), Query Frame = 3 Query: 3 LGCVFPEILSRTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLTGFVEGYRIXXXXXXXXXXXXXXXXAFDPLG 269 LGCVFPE+LSR GVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVL G VEGYRI +FDPLG Sbjct: 100 LGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLG 188 HSP 2 Score: 128.257 bits (321), Expect = 1.011e-63 Identity = 60/66 (90.91%), Postives = 63/66 (95.45%), Query Frame = 1 Query: 274 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 471 ADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK Sbjct: 190 ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255 The following BLAST results are available for this feature:
BLAST of CX300611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 69
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300611 ID=CX300611; Name=CX300611; organism=Citrus clementina; type=EST; length=606bpback to top |