CX300614

Overview
NameCX300614
Unique NameCX300614
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_PEA (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Pisum sativum GN=GDCSP PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 6.431e-38
Identity = 71/88 (80.68%), Postives = 78/88 (88.64%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+CDALISIR+E A++E G AD+HNNVLKGAPHPPSLLM D WTKP SRE AA PA+WLR AKFWP TGRVDNVYGDRNL+CTLLP
Sbjct:  957 LDRFCDALISIRKEIAEVEKGNADVHNNVLKGAPHPPSLLMADAWTKPYSREYAAFPAAWLRGAKFWPTTGRVDNVYGDRNLVCTLLP 1044          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_SOLTU (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Solanum tuberosum GN=GDCSP PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.871e-37
Identity = 73/88 (82.95%), Postives = 76/88 (86.36%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+CDALISIREE AQIE G  DI+NNVLKGAPHPPS+LM D WTKP SRE AA PA WLR AKFWP TGRVDNVYGDRNLICTLLP
Sbjct:  936 LDRFCDALISIREEIAQIEKGNVDINNNVLKGAPHPPSMLMADAWTKPYSREYAAYPAPWLRSAKFWPTTGRVDNVYGDRNLICTLLP 1023          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP2_ARATH (Glycine dehydrogenase [decarboxylating] 2, mitochondrial OS=Arabidopsis thaliana GN=At4g33010 PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.213e-36
Identity = 71/88 (80.68%), Postives = 75/88 (85.23%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+CDALISIREE AQIE G AD+ NNVLKGAPHPPSLLM DTW KP SRE AA PA WLR +KFWP TGRVDNVYGDR L+CTLLP
Sbjct:  939 LDRFCDALISIREEIAQIEKGNADVQNNVLKGAPHPPSLLMADTWKKPYSREYAAFPAPWLRSSKFWPTTGRVDNVYGDRKLVCTLLP 1026          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP1_ARATH (Glycine dehydrogenase [decarboxylating] 1, mitochondrial OS=Arabidopsis thaliana GN=GDCSP PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.027e-35
Identity = 70/88 (79.55%), Postives = 75/88 (85.23%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+CDALISIREE +QIE G AD +NNVLKGAPHPPSLLM DTW KP SRE AA PA WLR +KFWP TGRVDNVYGDRNL+CTL P
Sbjct:  945 LDRFCDALISIREEISQIEKGNADPNNNVLKGAPHPPSLLMADTWKKPYSREYAAFPAPWLRSSKFWPTTGRVDNVYGDRNLVCTLQP 1032          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSPA_FLAPR (Glycine dehydrogenase [decarboxylating] A, mitochondrial OS=Flaveria pringlei GN=GDCSPA PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.303e-34
Identity = 67/88 (76.14%), Postives = 73/88 (82.95%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+CDALISIR+E A+IE G  D++NNV+KGAPHPP LLM D WTKP SRE AA PA WLR AKFWP T RVDNVYGDRNLICTL P
Sbjct:  938 LDRFCDALISIRQEIAEIEKGNVDLNNNVIKGAPHPPQLLMADKWTKPYSREYAAYPAPWLRAAKFWPTTCRVDNVYGDRNLICTLQP 1025          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_FLAAN (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria anomala GN=GDCSP PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.634e-34
Identity = 67/88 (76.14%), Postives = 72/88 (81.82%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+CDALISIR+E A+IE G  D +NNV+KGAPHPP LLM D WTKP SRE AA PA WLR AKFWP T RVDNVYGDRNLICTL P
Sbjct:  935 LDRFCDALISIRQEIAEIEKGNVDFNNNVIKGAPHPPQLLMADKWTKPYSREYAAYPAPWLRAAKFWPTTCRVDNVYGDRNLICTLQP 1022          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSPB_FLAPR (Glycine dehydrogenase [decarboxylating] B, mitochondrial OS=Flaveria pringlei GN=GDCSPB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.634e-34
Identity = 67/88 (76.14%), Postives = 72/88 (81.82%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+CDALISIR+E A+IE G  D +NNV+KGAPHPP LLM D WTKP SRE AA PA WLR AKFWP T RVDNVYGDRNLICTL P
Sbjct:  935 LDRFCDALISIRQEIAEIEKGNVDFNNNVIKGAPHPPQLLMADKWTKPYSREYAAYPAPWLRAAKFWPTTCRVDNVYGDRNLICTLQP 1022          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_FLATR (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria trinervia GN=GDCSPA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 7.358e-34
Identity = 67/88 (76.14%), Postives = 72/88 (81.82%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+CDALISIR+E A+IE G  D +NNV+KGAPHPP LLM D WTKP SRE AA PA WLR AKFWP T RVDNVYGDRNLICTL P
Sbjct:  935 LDRFCDALISIRQEIAEIEKGTVDFNNNVIKGAPHPPQLLMADKWTKPYSREYAAYPAPWLRAAKFWPTTCRVDNVYGDRNLICTLQP 1022          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_ANAVT (Glycine dehydrogenase [decarboxylating] OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gcvP PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.099e-24
Identity = 51/88 (57.95%), Postives = 61/88 (69.32%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+CDALI+IR+E A IE GK D HNN+LK APH    L+   W  P SRE AA P SW R  KFWP+ GR+D  +GDRN +C+ LP
Sbjct:  882 LDRFCDALIAIRQEIAAIEAGKMDTHNNLLKNAPHTIESLIVGEWLHPYSREQAAYPVSWTREYKFWPSVGRIDAAFGDRNFVCSCLP 969          
BLAST of CX300614 vs. ExPASy Swiss-Prot
Match: GCSP_NOSP7 (Glycine dehydrogenase [decarboxylating] OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=gcvP PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.286e-24
Identity = 51/88 (57.95%), Postives = 61/88 (69.32%), Query Frame = 2
Query:    2 LDRYCDALISIREENAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPNSRENAA*PASWLRFAKFWPATGRVDNVYGDRNLICTLLP 265
            LDR+CDALI+IR+E A+IE GK D  +NVLK APH    L+   W  P SRE AA PA W R  KFWPA GR+D  +GDRN +C+ LP
Sbjct:  886 LDRFCDALIAIRQEIAEIEVGKVDAQDNVLKNAPHTAESLITGEWQHPYSREQAAYPAPWTREYKFWPAVGRIDAAFGDRNFVCSCLP 973          
The following BLAST results are available for this feature:
BLAST of CX300614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
GCSP_PEA6.431e-3880.68Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_SOLTU1.871e-3782.95Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP2_ARATH1.213e-3680.68Glycine dehydrogenase [decarboxylating] 2, mitocho... [more]
GCSP1_ARATH1.027e-3579.55Glycine dehydrogenase [decarboxylating] 1, mitocho... [more]
GCSPA_FLAPR3.303e-3476.14Glycine dehydrogenase [decarboxylating] A, mitocho... [more]
GCSP_FLAAN5.634e-3476.14Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSPB_FLAPR5.634e-3476.14Glycine dehydrogenase [decarboxylating] B, mitocho... [more]
GCSP_FLATR7.358e-3476.14Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_ANAVT3.099e-2457.95Glycine dehydrogenase [decarboxylating] OS=Anabaen... [more]
GCSP_NOSP75.286e-2457.95Glycine dehydrogenase [decarboxylating] OS=Nostoc ... [more]

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Properties
Property NameValue
Genbank descriptionC07012C07SK SaltLeaf1 Citrus clementina cDNA clone C07012C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300614 ID=CX300614; Name=CX300614; organism=Citrus clementina; type=EST; length=547bp
GTTGGACAGGTATTGTGATGCTCTCATCTCCATCAGAGAAGAAAATGCAC
AGATTGAAAACGGGAAGGCAGATATCCACAACAATGTCCTGAAGGGGGCG
CCTCATCCACCATCTTTGCTCATGGGAGACACATGGACTAAACCAAACTC
TCGAGAAAATGCAGCCTAACCTGCTTCCTGGCTCCGGTTTGCTAAGTTCT
GGCCTGCTACAGGACGCGTTGACAATGTGTATGGTGACCGCAACCTCATC
TGCACCCTTCTTCCAGCTGCACAAGTTGCTGAGGAGCAGGCTGCAGCCAC
TGGTTAGAGTTGCCATCAACATGCCCCCTGGTGCAAGGTTTCTTCAGGAG
CATGGAAAAATTTGGAATCATCAGCACTTCCTGATTTGATTGTATATATG
AAAACAGAGCCTCATGGCCCAATGCTTCCCTTTGATATACTGATTAATTA
TATCAGCTTCTTTAAAACAATAGTTGCTGATTGCAACTCAGGTACTGCAA
ATTATCATCCCAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCGGT
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