CX305572

Overview
NameCX305572
Unique NameCX305572
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:2006..2468. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 4.880e-63
Identity = 105/150 (70.00%), Postives = 120/150 (80.00%), Query Frame = 3
Query:    9 RGLAVEDPSAPHGLKPTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTARCNIATENPSDEQWKFFLEKPENALL 458
            RGLA ED +A HG++ TI DYPFANDGL LWDAIK+WVTDYV HYYPD+ L+ SDE+LQ WW+E+R +GHGDKK EPWWPVLKT  DLI ++TTI WVTSGHHA VNFGQY Y GYFPNRPTT R  + TE+P+DE  K F E PE  LL
Sbjct:  644 RGLAEEDKTAEHGVRLTIPDYPFANDGLILWDAIKEWVTDYVKHYYPDEELITSDEELQGWWSEVRNIGHGDKKDEPWWPVLKTQDDLIGVVTTIAWVTSGHHAAVNFGQYGYGGYFPNRPTTTRIRMPTEDPTDEALKEFYESPEKVLL 793          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 6.187e-50
Identity = 90/150 (60.00%), Postives = 107/150 (71.33%), Query Frame = 3
Query:    9 RGLAVEDPSAPHGLKPTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTARCNIATENPSD-EQWKFFLEKPENAL 455
            RG+A EDP+A HGLK  IEDYPFANDGL +WDAIK WV  YV  +YPD   V  DE+LQA+WTE+RT GHGDKK  PWWP L +P+ L   +TTIVWV + HHA VNFGQY + GYFPNRP+ AR  +  E P D    + FL+ P+ AL
Sbjct:  671 RGMAEEDPTAEHGLKLAIEDYPFANDGLLIWDAIKTWVQAYVARFYPDADSVAGDEELQAFWTEVRTKGHGDKKDAPWWPKLDSPESLAHTLTTIVWVAAAHHAAVNFGQYDFGGYFPNRPSIARTVMPVEEPVDGAAMERFLDNPDQAL 820          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.378e-49
Identity = 89/150 (59.33%), Postives = 107/150 (71.33%), Query Frame = 3
Query:    9 RGLAVEDPSAPHGLKPTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTARCNIATENPSD-EQWKFFLEKPENAL 455
            RG+A EDP+A HGL+  IEDYPFANDGL +WDAIK WV  YV  +YPD   V  DE+LQA+WTE+RT GHGDKK  PWWP L +P+ L   +TTIVWV + HHA VNFGQY + GYFPNRP+ AR  +  E P D    + FL+ P+ AL
Sbjct:  688 RGMAEEDPTAEHGLRLAIEDYPFANDGLLIWDAIKTWVQAYVARFYPDADSVAGDEELQAFWTEVRTKGHGDKKDAPWWPKLDSPESLAHTLTTIVWVAAAHHAAVNFGQYDFGGYFPNRPSIARTVMPVEEPVDGAAMERFLDNPDQAL 837          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 4.903e-47
Identity = 84/151 (55.63%), Postives = 106/151 (70.20%), Query Frame = 3
Query:    6 SRGLAVEDPSAPHGLKPTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTARCNIATENPSDEQWKFFLEKPENALL 458
            +RGLAV        L+  I+DYP+A+DGL +W +IKQW +DYV+ YY     V  DE+L+AWW E+RT GH DKK EPWWPV  T ++L++I+T I+WVTSGHHA VNFGQY Y GYFPNRPT  R NI  E   D++ K F+ +PE  LL
Sbjct:  645 NRGLAVRRDDGE--LELAIKDYPYADDGLLIWGSIKQWASDYVDFYYKSDGDVAGDEELRAWWEEVRTKGHADKKDEPWWPVCDTKENLVQILTIIMWVTSGHHAAVNFGQYHYAGYFPNRPTVVRRNIPVEENRDDEMKKFMARPEEVLL 793          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 6.403e-47
Identity = 86/151 (56.95%), Postives = 108/151 (71.52%), Query Frame = 3
Query:    9 RGLAVEDPSAPHGLKPTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTARCNIATENPSDEQWKFFLEKPENALLN 461
            RG+AV +P+    L+  IEDYP+ANDGL +WDAIKQW   YV HYYP  + +  DE+LQAWWTE+RT GH DK+ EPWWP L + ++L + + TI+WVTSGHHA VNFGQY   GY PNRPT AR N+ TE   D+  + F+E PE  LL+
Sbjct:  677 RGMAVRNPNGE--LELAIEDYPYANDGLLVWDAIKQWALTYVQHYYPCAADIVDDEELQAWWTEVRTKGHADKQDEPWWPELDSHENLAQTLATIMWVTSGHHAAVNFGQYPMAGYIPNRPTMARRNMPTEIGGDDM-RDFVEAPEKVLLD 824          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 2.433e-46
Identity = 80/150 (53.33%), Postives = 105/150 (70.00%), Query Frame = 3
Query:    9 RGLAVEDPSAPHGLKPTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTARCNIATENPSDEQWKFFLEKPENALL 458
            RG+AVED S+PHG++  IEDYP+A DGL++W AIK WVTDY + YY     +  D +LQAWW E+R VGHGDKK+EPWWP ++TP++LI+  TTI+W+ S  HA VNFGQY Y GY PNRPT +R  +    P   +++     P+ A L
Sbjct:  611 RGVAVEDSSSPHGVRLLIEDYPYAVDGLEIWSAIKSWVTDYCSFYYGSDEEILKDNELQAWWKELREVGHGDKKNEPWWPEMETPQELIDSCTTIIWIASALHAAVNFGQYPYAGYLPNRPTVSRRFM--PEPGTPEYEELKRNPDKAFL 758          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOXA_SOLLC (Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 2.060e-45
Identity = 78/150 (52.00%), Postives = 105/150 (70.00%), Query Frame = 3
Query:    9 RGLAVEDPSAPHGLKPTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTARCNIATENPSDEQWKFFLEKPENALL 458
            RG+AVED S+PHG++  I+DYP+A DGL++W AIK WVTDY + YY     +  D +LQAWW E+R VGHGDKK+EPWW  ++TP++LI+  TTI+W+ S  HA VNFGQY Y GY PNRPT +R  +    P   +++   + P+ A L
Sbjct:  610 RGVAVEDSSSPHGVRLLIDDYPYAVDGLEIWSAIKSWVTDYCSFYYGSNEEILKDNELQAWWKEVREVGHGDKKNEPWWAEMETPQELIDSCTTIIWIASALHAAVNFGQYPYAGYLPNRPTVSRKFM--PEPGTPEYEELKKNPDKAFL 757          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOX5_ARATH (Lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana GN=LOX5 PE=1 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 2.974e-44
Identity = 74/125 (59.20%), Postives = 95/125 (76.00%), Query Frame = 3
Query:    9 RGLAVEDPSAPHGLKPTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTAR 383
            RG+AVEDP++ +G+K  IEDYPFA DGL++W AIK WVT+Y   YY +   VQ+D ++Q+WWTE+RT GHGDK+HE WWP ++T  DLIE  T I+W+ S  HA VNFGQY Y G+ PNRPT +R
Sbjct:  631 RGVAVEDPNSDNGVKLLIEDYPFAVDGLEIWSAIKTWVTEYCTFYYNNDKTVQTDTEIQSWWTELRTKGHGDKRHESWWPSMQTRDDLIETCTIIIWIASALHAAVNFGQYPYAGFLPNRPTVSR 755          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOXX_SOYBN (Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 4.295e-43
Identity = 81/150 (54.00%), Postives = 101/150 (67.33%), Query Frame = 3
Query:    9 RGLAVEDPSAPHGLKPTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTARCNIATENPSDEQWKFFLEKPENALL 458
            RGLA+EDPSAPHGL+  IEDYP+A DGL++WDAIK WV +YV+ YYP  + VQ D +LQAWW E    GHGD K +PWWP ++T +DLI+  + IVW  S  HA VNFGQY Y G   NRPT AR  I  E     ++   ++ P+ A L
Sbjct:  614 RGLAIEDPSAPHGLRLVIEDYPYAVDGLEIWDAIKTWVHEYVSLYYPTDAAVQQDTELQAWWKEAVEKGHGDLKEKPWWPKMQTTEDLIQSCSIIVWTASALHAAVNFGQYPYGGLILNRPTLARRFIPAE--GTPEYDEMVKNPQKAYL 761          
BLAST of CX305572 vs. ExPASy Swiss-Prot
Match: LOXB_PHAVU (Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 7.326e-43
Identity = 71/125 (56.80%), Postives = 95/125 (76.00%), Query Frame = 3
Query:    9 RGLAVEDPSAPHGLKPTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVQSDEQLQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHATVNFGQYTYRGYFPNRPTTAR 383
            RG+AV+DPSAPHG+K  IEDYP+A+DGL++WDAIK WV +YV  YY    ++Q D +LQAWW E+  VGHGD K +PWWP +++ ++L+E+ TT++W+ S  HA VNFGQY Y G   NRPT +R
Sbjct:  496 RGVAVKDPSAPHGVKLVIEDYPYASDGLEIWDAIKSWVVEYVAFYYKSDEVLQQDSELQAWWKELVQVGHGDLKDKPWWPKMQSRENLVEVSTTLIWIASALHAAVNFGQYPYGGLILNRPTISR 620          
The following BLAST results are available for this feature:
BLAST of CX305572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
LOX2_ARATH4.880e-6370.00Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOXC1_ORYSJ6.187e-5060.00Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOXC2_ORYSJ1.378e-4959.33Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOX23_HORVU4.903e-4755.63Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOX21_HORVU6.403e-4756.95Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOX1_SOLTU2.433e-4653.33Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]
LOXA_SOLLC2.060e-4552.00Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 P... [more]
LOX5_ARATH2.974e-4459.20Lipoxygenase 5, chloroplastic OS=Arabidopsis thali... [more]
LOXX_SOYBN4.295e-4354.00Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV... [more]
LOXB_PHAVU7.326e-4356.80Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2... [more]

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Properties
Property NameValue
Genbank descriptionC18007D07Rv Drought1 Citrus clementina cDNA clone C18007D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305572 ID=CX305572; Name=CX305572; organism=Citrus clementina; type=EST; length=463bp
GCGGGAGCCGGGGATTGGCTGTTGAAGATCCAAGTGCTCCACATGGCTTG
AAGCCAACAATTGAAGACTATCCTTTTGCCAATGATGGCCTTGATCTCTG
GGATGCCATAAAACAATGGGTTACCGATTATGTTAATCACTACTACCCTG
ATAAAAGCCTTGTACAATCTGATGAACAGCTCCAAGCTTGGTGGACTGAA
ATTCGAACTGTGGGACACGGTGACAAGAAACATGAACCTTGGTGGCCTGT
CTTGAAAACCCCTAAAGATTTAATTGAAATCATCACAACTATTGTTTGGG
TAACATCTGGTCACCACGCAACTGTTAACTTCGGCCAATACACTTACAGA
GGCTATTTCCCCAATAGGCCAACCACTGCAAGATGCAACATTGCCACTGA
AAATCCATCTGATGAACAATGGAAATTCTTCCTTGAAAAACCTGAAAATG
CACTTTTGAATAC
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