CX305776

Overview
NameCX305776
Unique NameCX305776
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length321
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX305776 vs. ExPASy Swiss-Prot
Match: PAO_ARATH (Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=PAO PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 5.762e-43
Identity = 75/91 (82.42%), Postives = 85/91 (93.41%), Query Frame = 1 
Query:   49 EDFSDPSHIDFAHHKVTGRRDRAKPLPFKLESSGHWGFAGANDGNPRISAKFVAPCYYMNKIEIDTKLPVVGDKKWIIWICSFNVPMAPGK 321
            E+ SDPSHIDFAHHKVTGRRDRAKPLPFK+ESSG WGF GAND +PRI+AKFVAPCY MNKIE+D KLP+VG++KW+IWICSFN+PMAPGK
Sbjct:  245 ENVSDPSHIDFAHHKVTGRRDRAKPLPFKVESSGPWGFQGANDDSPRITAKFVAPCYSMNKIELDAKLPIVGNQKWVIWICSFNIPMAPGK 335
The following BLAST results are available for this feature:
BLAST of CX305776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PAO_ARATH5.762e-4382.42Pheophorbide a oxygenase, chloroplastic OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionC18010B05Rv Drought1 Citrus clementina cDNA clone C18010B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305776 ID=CX305776; Name=CX305776; organism=Citrus clementina; type=EST; length=321bp
GCGGGGAACGCGCATCAAACAGATATATAGCTTTGAAAACAACAAAATGA
AGATTTCTCAGATCCTTCCCACATTGATTTTGCACATCACAAGGTTACCG
GCAGAAGGGACAGGGCCAAGCCTTTACCGTTTAAGTTGGAGTCTAGTGGA
CATTGGGGATTTGCTGGAGCCAATGATGGAAACCCAAGGATAAGTGCTAA
ATTTGTTGCTCCTTGTTATTACATGAACAAGATAGAGATAGATACAAAAC
TTCCTGTAGTTGGTGATAAAAAATGGATAATATGGATTTGTTCCTTCAAC
GTACCAATGGCACCAGGGAAA
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