CX308566
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX308566 vs. ExPASy Swiss-Prot
Match: 4CLL4_ORYSJ (4-coumarate--CoA ligase-like 4 OS=Oryza sativa subsp. japonica GN=4CLL4 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 6.570e-14 Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 2 Query: 143 QVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSKL 256 QVAPYK+VR+VAFV IPKN SGKILRKDLIKLATSKL Sbjct: 515 QVAPYKKVRKVAFVTDIPKNASGKILRKDLIKLATSKL 552 HSP 2 Score: 29.261 bits (64), Expect = 6.570e-14 Identity = 13/17 (76.47%), Postives = 15/17 (88.24%), Query Frame = 3 Query: 9 GSRLSENEVMDFVARQV 59 GS LSE EVM+FVA+QV Sbjct: 500 GSNLSEREVMEFVAKQV 516
BLAST of CX308566 vs. ExPASy Swiss-Prot
Match: 4CLL5_ARATH (4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana GN=4CLL5 PE=1 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 1.440e-13 Identity = 32/36 (88.89%), Postives = 36/36 (100.00%), Query Frame = 2 Query: 143 QVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATS 250 QVAPYKR+R+VAFV+SIPKNPSGKILRKDLIK+ATS Sbjct: 507 QVAPYKRIRKVAFVSSIPKNPSGKILRKDLIKIATS 542 HSP 2 Score: 26.5646 bits (57), Expect = 1.440e-13 Identity = 11/19 (57.89%), Postives = 15/19 (78.95%), Query Frame = 3 Query: 3 EAGSRLSENEVMDFVARQV 59 + GS LSE +M+FVA+QV Sbjct: 490 KTGSSLSEKTIMEFVAKQV 508
BLAST of CX308566 vs. ExPASy Swiss-Prot
Match: 4CLL2_ARATH (4-coumarate--CoA ligase-like 2 OS=Arabidopsis thaliana GN=4CLL2 PE=2 SV=2) HSP 1 Score: 62.7734 bits (151), Expect = 1.965e-12 Identity = 28/38 (73.68%), Postives = 35/38 (92.11%), Query Frame = 2 Query: 143 QVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSKL 256 QV+PYK++R+V F+ASIPKNPSGKILR++L KL TSKL Sbjct: 528 QVSPYKKIRKVTFLASIPKNPSGKILRRELTKLTTSKL 565 HSP 2 Score: 28.4906 bits (62), Expect = 1.965e-12 Identity = 12/19 (63.16%), Postives = 16/19 (84.21%), Query Frame = 3 Query: 3 EAGSRLSENEVMDFVARQV 59 + GS LSE+E+M FVA+QV Sbjct: 511 KVGSNLSESEIMGFVAKQV 529
BLAST of CX308566 vs. ExPASy Swiss-Prot
Match: 4CLL3_ARATH (4-coumarate--CoA ligase-like 3 OS=Arabidopsis thaliana GN=4CLL3 PE=2 SV=2) HSP 1 Score: 62.7734 bits (151), Expect = 2.674e-11 Identity = 29/38 (76.32%), Postives = 35/38 (92.11%), Query Frame = 2 Query: 143 QVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSKL 256 QVAPYK++R+VAF++SIPK SGK LRKDLIKL+TSKL Sbjct: 515 QVAPYKKIRKVAFISSIPKTASGKTLRKDLIKLSTSKL 552 HSP 2 Score: 24.6386 bits (52), Expect = 2.674e-11 Identity = 10/16 (62.50%), Postives = 13/16 (81.25%), Query Frame = 3 Query: 12 SRLSENEVMDFVARQV 59 S LSE EV+DF++ QV Sbjct: 501 SNLSEKEVIDFISNQV 516
BLAST of CX308566 vs. ExPASy Swiss-Prot
Match: 4CLL4_ARATH (4-coumarate--CoA ligase-like 4 OS=Arabidopsis thaliana GN=4CLL4 PE=2 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 7.592e-11 Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 2 Query: 143 QVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSKL 256 QVAPYK++R+V+F+ SIPK SGK LRKDLIKLATSKL Sbjct: 513 QVAPYKKIRKVSFINSIPKTASGKTLRKDLIKLATSKL 550 HSP 2 Score: 24.2534 bits (51), Expect = 7.592e-11 Identity = 9/16 (56.25%), Postives = 14/16 (87.50%), Query Frame = 3 Query: 12 SRLSENEVMDFVARQV 59 S LSE +V+DF+++QV Sbjct: 499 SNLSEKQVIDFISKQV 514 The following BLAST results are available for this feature:
BLAST of CX308566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX308566 ID=CX308566; Name=CX308566; organism=Citrus clementina; type=EST; length=357bpback to top |