DY256864

Overview
NameDY256864
Unique NameDY256864
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1035
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY256864_ssr704 microsatellite DY256864_ssr704:704..715. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY256864 vs. ExPASy Swiss-Prot
Match: RAV2_ARATH (AP2/ERF and B3 domain-containing transcription repressor RAV2 OS=Arabidopsis thaliana GN=RAV2 PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 1.251e-76
Identity = 163/266 (61.28%), Postives = 196/266 (73.68%), Query Frame = 3
Query:    3 FRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNY---GLDANGKRVIKHGEGDGVATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGS--TSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKARTGPVENPVEPVQMMRLFGVNIFK---IPGNGLVGVDKIGCNINNNNDGKRLREM-ELLSLECSKNK 773
            FRGRDAV NFK +       ++GD+  AFL +HSK+EIVDMLRKHTY DELEQ+ +      +DANGKR       +G +T   +D+VLK R+ LFEKAVTPSDVGKLNRLVIPKQHAEKHFPL S S   +KG+L+NFEDV GKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNL+AGD+V+F RSTG +RQLYIDWK R+GP ENPV+ V  +RLFGV+IF    +  N +V V    C       GKR R++ ++ +L CSK +
Sbjct:  109 FRGRDAVVNFKNVL------EDGDL--AFLEAHSKAEIVDMLRKHTYADELEQNNKRQLFLSVDANGKR-------NGSSTT-QNDKVLKTREVLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLPSPSPAVTKGVLINFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVTFERSTGLERQLYIDWKVRSGPRENPVQVV--VRLFGVDIFNVTTVKPNDVVAV----CG------GKRSRDVDDMFALRCSKKQ 346          
BLAST of DY256864 vs. ExPASy Swiss-Prot
Match: RAVL1_ARATH (AP2/ERF and B3 domain-containing transcription repressor TEM1 OS=Arabidopsis thaliana GN=TEM1 PE=1 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 2.359e-75
Identity = 159/268 (59.33%), Postives = 188/268 (70.15%), Query Frame = 3
Query:    3 FRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHGEGDGVATA-FGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTS--------KGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKARTGPVENPVEPVQMMRLFGVNIFKIPGN--GLVGVDKIGCNINNNNDGKRLREMELLSLECSKNK 773
            FRGRDAVTNFK      +  D  D E AFL +HSK+EIVDMLRKHTY DE EQS+R + ++ +GKR        G+ TA +G+D VL+AR+ LFEK VTPSDVGKLNRLVIPKQHAEKHFPL + +T+        KG+L+N ED TGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNL+AGD+V F RSTG DRQLYI WK R+ PV+       ++RLFGVNIF +       V V+ +G         KR RE +L SL CSK +
Sbjct:  116 FRGRDAVTNFK------SQVDGNDAESAFLDAHSKAEIVDMLRKHTYADEFEQSRRKF-VNGDGKR-------SGLETATYGNDAVLRAREVLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLPAMTTAMGMNPSPTKGVLINLEDRTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVCFERSTGPDRQLYIHWKVRSSPVQT------VVRLFGVNIFNVSNEKPNDVAVECVG--------KKRSREDDLFSLGCSKKQ 355          
BLAST of DY256864 vs. ExPASy Swiss-Prot
Match: RAV1_ARATH (AP2/ERF and B3 domain-containing transcription factor RAV1 OS=Arabidopsis thaliana GN=RAV1 PE=1 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 2.066e-71
Identity = 153/261 (58.62%), Postives = 184/261 (70.50%), Query Frame = 3
Query:    3 FRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHG--EGDGVATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTS-KGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKARTGPVENPVEPVQMMRLFGVNIF-KIPGNGLVGVDKIGCNINNNNDGKRLREMELLSLECSKNK 773
            FR RDAVTNFK +       DE +++  FL+SHSKSEIVDMLRKHTYN+ELEQSKR    + N  R +       DGV+T        ++ + LFEKAVTPSDVGKLNRLVIPK HAEKHFPL S + S KG+LLNFEDV GKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNL+AGD+VSF RS G D+QLYI WK+R+G   + ++  +++RLFGVNI  +   N +VG              KR+ + E+LSL CSK +
Sbjct:  106 FRRRDAVTNFKDVKM-----DEDEVD--FLNSHSKSEIVDMLRKHTYNEELEQSKRRRNGNGNMTRTLLTSGLSNDGVSTTG-----FRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSG---SDLDAGRVLRLFGVNISPESSRNDVVG-------------NKRVNDTEMLSLVCSKKQ 338          
BLAST of DY256864 vs. ExPASy Swiss-Prot
Match: RAVL4_ARATH (AP2/ERF and B3 domain-containing transcription factor ARF14 OS=Arabidopsis thaliana GN=ARF14 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 1.484e-61
Identity = 133/220 (60.45%), Postives = 156/220 (70.91%), Query Frame = 3
Query:    3 FRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHGEGDGVA-TAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTS---KGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKARTGPVENPVEPVQMMRLFGVNI 650
            FRGRDAVTNFK      T+ +E   E+ FL++HSKSEIVDMLRKHTY +EL+Q KRN   D NGK          V  T F      K  + LFEK VTPSDVGKLNRLVIPK  AEKHFPL  G+ +   KG+LLNFEDV GKVWRFRYSYWNSSQSYVLTKGWSRFVKEK L AGD++SF RS   D++ +I WK+++G     +E  ++MRLFGV+I
Sbjct:  106 FRGRDAVTNFKD-----TTFEE---EVEFLNAHSKSEIVDMLRKHTYKEELDQRKRNR--DGNGKETTAFALASMVVMTGF------KTAELLFEKTVTPSDVGKLNRLVIPKHQAEKHFPLPLGNNNVSVKGMLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKRLCAGDLISFKRSNDQDQKFFIGWKSKSG---LDLETGRVMRLFGVDI 306          
BLAST of DY256864 vs. ExPASy Swiss-Prot
Match: Y1934_ORYSJ (AP2/ERF and B3 domain-containing protein Os01g0693400 OS=Oryza sativa subsp. japonica GN=Os01g0693400 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.938e-61
Identity = 132/235 (56.17%), Postives = 157/235 (66.81%), Query Frame = 3
Query:    3 FRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHGEGDGVATAFGSDRV-LKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQ---SGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHR---STGGDRQLYIDWK-------ARTGPVENPV-EPVQMMRLFGVNIFKIP 662
            FRGRDAVTNF+ ++ A     +   E+ FL++ SK+E+VDMLRKHTY DEL QSKR +               +G  ++  S      ARD LF+K VTPSDVGKLNRLVIPKQHAEKHFPLQ   +G  SKG+LLNFED  GKVWRFRYSYWNSSQSYVLTKGWSRFVKEK L AGD+V F+R   S G D +L+ID K       A   P + P   PV+ +RLFGV++   P
Sbjct:  126 FRGRDAVTNFRPLAEA---DPDAAAELRFLATRSKAEVVDMLRKHTYFDELAQSKRTFAASTPSAATTTASLSNGHLSSPRSPFAPAAARDHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQLPSAGGESKGVLLNFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDVVGFYRSAASAGDDGKLFIDCKLVRSTGAALASPADQPAPSPVKAVRLFGVDLLTAP 357          
BLAST of DY256864 vs. ExPASy Swiss-Prot
Match: Y5498_ORYSJ (AP2/ERF and B3 domain-containing protein Os05g0549800 OS=Oryza sativa subsp. japonica GN=Os05g0549800 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 2.218e-57
Identity = 127/249 (51.00%), Postives = 153/249 (61.45%), Query Frame = 3
Query:    3 FRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHGEGDGVATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQ------------------SGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKARTGP---------------VENPVEPVQMMRLFGVNI 650
            FRGRDAVTNF+ ++    S  E  +E+ FL+S SK+E+VDMLRKHTY +EL Q+KR +   A      KH      +++        AR+ LF+K VTPSDVGKLNRLVIPKQHAEKHFPLQ                   G   KG+LLNFED  GKVW+FRYSYWNSSQSYVLTKGWSRFVKEK L AGD V F+R+ G + QL+ID K R  P                  P   V+ +RLFGV++
Sbjct:  113 FRGRDAVTNFRPLA---ESDPEAAVELRFLASRSKAEVVDMLRKHTYLEELTQNKRAFA--AISPPPPKHPASSPTSSS-------AAREHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQLPPPTTTSSVAAAADAAAGGGDCKGVLLNFEDAAGKVWKFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVGFYRAAGKNAQLFIDCKVRAKPTTAAAAAAFLSAVAAAAAPPPAVKAIRLFGVDL 349          
BLAST of DY256864 vs. ExPASy Swiss-Prot
Match: Y1410_ORYSJ (AP2/ERF and B3 domain-containing protein Os01g0141000 OS=Oryza sativa subsp. japonica GN=Os01g0141000 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.346e-54
Identity = 125/238 (52.52%), Postives = 150/238 (63.03%), Query Frame = 3
Query:    3 FRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHGEGDGVATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQ---------SGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRST-GGDRQLYIDWKARTG------------PVENPVEPVQMMRLFGVNI 650
            +RGRDA TNF   + +         E+AFL++HSK+EIVDMLRKHTY DEL Q              ++ G G G   A        AR+ LFEKAVTPSDVGKLNRLV+PKQHAEKHFPL+         + +T KG+LLNFED  GKVWRFRYSYWNSSQSYVLTKGWSRFV+EK L+AGD + F RS  G D+ L+ID K                P  +  EP +++RLFGV+I
Sbjct:  113 YRGRDAATNFPGAAASAA-------ELAFLAAHSKAEIVDMLRKHTYADELRQG-------------LRRGRGMG---ARAQPTPSWAREPLFEKAVTPSDVGKLNRLVVPKQHAEKHFPLRRAASSDSASAAATGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGDTIVFSRSAYGPDKLLFIDCKKNNAAAATTTCAGDERPTTSGAEP-RVVRLFGVDI 326          
BLAST of DY256864 vs. ExPASy Swiss-Prot
Match: Y1407_ORYSJ (Putative AP2/ERF and B3 domain-containing protein Os01g0140700 OS=Oryza sativa subsp. japonica GN=Os01g0140700 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 2.011e-50
Identity = 119/226 (52.65%), Postives = 144/226 (63.72%), Query Frame = 3
Query:    3 FRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHGEGDGVATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPL-----QSGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRST---GGDRQLYIDWK--ARTGPVENPVEPVQMMRLFGVNI 650
            FRGRDAVTN +  +  G S+ E    +AFL++HSK+E+VDMLRKHTY+DEL+Q  R       G R                     AR+ LFEKAVTPSDVGKLNRLV+PKQ AE+HFP       S +  KG+LLNFED  GKVWRFRYSYWNSSQSYVLTKGWSRFV+EK L+ GD V+F RS    G ++ L ID K   R        +   +++LFGV+I
Sbjct:  111 FRGRDAVTN-RAPAAEGASAGE----LAFLAAHSKAEVVDMLRKHTYDDELQQGLRR------GSRA--------------QPTPRWAREPLFEKAVTPSDVGKLNRLVVPKQQAERHFPFPLRRHSSDAAGKGVLLNFEDGDGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRPGDTVAFSRSAAAWGTEKHLLIDCKKMERNNLATVDDDARVVVKLFGVDI 311          
BLAST of DY256864 vs. ExPASy Swiss-Prot
Match: NGA1_ARATH (B3 domain-containing transcription factor NGA1 OS=Arabidopsis thaliana GN=NGA1 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 2.015e-42
Identity = 83/122 (68.03%), Postives = 97/122 (79.51%), Query Frame = 3
Query:  252 RVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHR---STGGDRQLYIDWKARTGPVENP 608
            R +  R+ +F+K VTPSDVGKLNRLVIPKQHAE+ FPL S S  KGLLLNFED+TGK WRFRYSYWNSSQSYV+TKGWSRFVK+K L AGDIVSF R    +G D +L+IDW+ R    ++P
Sbjct:   26 REVADREHMFDKVVTPSDVGKLNRLVIPKQHAERFFPLDSSSNEKGLLLNFEDLTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRCVGDSGRDSRLFIDWRRRPKVPDHP 147          
BLAST of DY256864 vs. ExPASy Swiss-Prot
Match: Y2835_ORYSJ (B3 domain-containing protein Os02g0683500 OS=Oryza sativa subsp. japonica GN=Os02g0683500 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 3.217e-40
Identity = 80/126 (63.49%), Postives = 94/126 (74.60%), Query Frame = 3
Query:  219 GDGVATAFGSDRVLKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGD---RQLYIDWKAR 587
            G G     G +  +  ++ +F+K VTPSDVGKLNRLVIPKQ+AEK+FPL + +  KGLLLNFED  GK WRFRYSYWNSSQSYV+TKGWSRFVKEK L AGD VSF R  G +    +L+IDWK R
Sbjct:   76 GSGGGGGGGGEAEVVEKEHMFDKVVTPSDVGKLNRLVIPKQYAEKYFPLDAAANEKGLLLNFEDRAGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFSRGIGDEAARHRLFIDWKRR 201          
The following BLAST results are available for this feature:
BLAST of DY256864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RAV2_ARATH1.251e-7661.28AP2/ERF and B3 domain-containing transcription rep... [more]
RAVL1_ARATH2.359e-7559.33AP2/ERF and B3 domain-containing transcription rep... [more]
RAV1_ARATH2.066e-7158.62AP2/ERF and B3 domain-containing transcription fac... [more]
RAVL4_ARATH1.484e-6160.45AP2/ERF and B3 domain-containing transcription fac... [more]
Y1934_ORYSJ1.938e-6156.17AP2/ERF and B3 domain-containing protein Os01g0693... [more]
Y5498_ORYSJ2.218e-5751.00AP2/ERF and B3 domain-containing protein Os05g0549... [more]
Y1410_ORYSJ1.346e-5452.52AP2/ERF and B3 domain-containing protein Os01g0141... [more]
Y1407_ORYSJ2.011e-5052.65Putative AP2/ERF and B3 domain-containing protein ... [more]
NGA1_ARATH2.015e-4268.03B3 domain-containing transcription factor NGA1 OS=... [more]
Y2835_ORYSJ3.217e-4063.49B3 domain-containing protein Os02g0683500 OS=Oryza... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2CE10ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256864 ID=DY256864; Name=DY256864; organism=Citrus clementina; type=EST; length=1035bp
GTTTCCGCGGACGCGATGCCGTCACAAACTTCAAGCAAATGTCTTGTGCT
GGAACGTCCTCCGACGAGGGTGATATCGAAATGGCGTTCTTGAGCTCCCA
CTCCAAGTCCGAGATCGTCGATATGCTGAGGAAGCACACTTACAACGACG
AGCTCGAGCAGAGCAAAAGAAACTACGGCCTCGATGCCAACGGCAAGCGT
GTAATCAAACACGGGGAAGGTGATGGTGTTGCCACTGCCTTCGGTTCAGA
CCGGGTCCTTAAAGCGCGTGACCAGCTTTTTGAAAAGGCCGTTACCCCAA
GTGACGTGGGGAAGCTGAACCGGCTCGTGATACCCAAGCAGCACGCGGAG
AAGCACTTCCCTTTACAGAGCGGAAGCACTTCCAAGGGACTGCTCTTGAA
CTTTGAGGATGTCACCGGCAAAGTTTGGAGGTTTAGGTACTCCTACTGGA
ACAGCAGTCAAAGCTACGTTTTGACCAAAGGGTGGAGCCGGTTCGTCAAG
GAGAAGAATTTGAAAGCCGGTGACATTGTTAGCTTTCACAGATCGACCGG
TGGGGATAGGCAGCTTTACATTGATTGGAAAGCCAGAACAGGACCGGTCG
AGAACCCGGTCGAGCCGGTCCAGATGATGAGGCTATTTGGGGTCAACATT
TTCAAAATTCCTGGGAATGGTCTTGTTGGTGTCGATAAGATTGGGTGCAA
CATTAATAATAATAACGACGGCAAAAGGCTTAGAGAAATGGAGCTCTTGT
CTCTAGAGTGCAGCAAAAACAAAGAATGATTGGAGCTTCGTAACATCTTT
TTTCTTTTTTCTTTCTTTTTGTAATCCTATTTTCTGGTGTAATTTTTTCT
TTTCTTTTTTCCTTTTGGGATTTTTTGGAATTTTGAGGAGTTTTAAGGGG
GAAGAAGAAAATGGGGGAAGGTTGGGGGCCATTAATTGCCAGTTTCAAAG
GAAAAAGGAAAGGTTGAATTTGAAAATTACAAGTGGCCAAAGCCTAAAAA
ACCTGAAATTAGGGTTGGACAAAATTTTTAAAATT
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