DY258162
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY258162 vs. ExPASy Swiss-Prot
Match: NOC2L_ORYSJ (Nucleolar complex protein 2 homolog OS=Oryza sativa subsp. japonica GN=Os10g0495500 PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.539e-25 Identity = 64/162 (39.51%), Postives = 104/162 (64.20%), Query Frame = 2 Query: 2 GIFIPVTSLVLDVLEYKVSKEVGKP---GKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTPFTQYYRSVMEKAASR 478 G FIPV+SL+LD+LE K + GKP GK N S ++ K +K+R F+E C+FSA++ L+ H AQWSY I+F E++ + L+ L+ F + + RR +K I ++ + EFV KR + FSPND +V++FLQ+EK + ++P ++Y ++ +++ R Sbjct: 440 GTFIPVSSLLLDMLEMK--ELGGKPDAVGKAVNLFSVKQVDKKTVKTRAFQEACIFSAVDELAKHLAQWSYSIAFFEMSFLTLVRLQNFCKTVKADRFRREIKDLIHQIKASAEFVSSKRAGIGFSPND-PAVDSFLQVEKEAKSSPLSKYVATLHQRSQDR 598
BLAST of DY258162 vs. ExPASy Swiss-Prot
Match: NOC2L_ARATH (Nucleolar complex protein 2 homolog OS=Arabidopsis thaliana GN=At2g18220 PE=2 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 2.624e-25 Identity = 64/162 (39.51%), Postives = 97/162 (59.88%), Query Frame = 2 Query: 2 GIFIPVTSLVLDVLEYKVSKE--VGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTPFTQYYRSVMEKAASRS 481 G FIPV+ L++D+LE K G GK + + +K+ K +K+R F+E CV++ +E L H +QWS ++F EL+ IP I LR F + + E R+ +K+ I +E N EFV KKR + F PND + E+FL+ EK +G TP QY + ++A R+ Sbjct: 467 GTFIPVSMLLVDMLEMKELNRPPTGGVGKGVDLRTLLKVSKPAVKTRAFQEACVYTVVEELVEHLSQWSCSVAFFELSFIPTIRLRSFCKSTKAERFRKEMKQLISQIEANSEFVNKKRALIKFLPND-LAAESFLEDEKKAGKTPLLQYAEIIRQRAQQRN 627
BLAST of DY258162 vs. ExPASy Swiss-Prot
Match: NOC2_YEAST (Nucleolar complex protein 2 OS=Saccharomyces cerevisiae GN=NOC2 PE=1 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 1.144e-12 Identity = 44/169 (26.04%), Postives = 85/169 (50.30%), Query Frame = 2 Query: 2 GIFIPVTSLVLDVLEYKVSKEVGKPGKD---FNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTPFTQYYRSVMEKAASRSLIMNEN 499 G+FIP+ L+ ++L + K + F+F +K + +L ++ ++E ++LL +FA + +I+FPEL T +I LR++ + S L + + ++ + QN F+++KR +V F P ++ V FL + TP Y E ++ +M E+ Sbjct: 510 GVFIPIYPLLSEILTSTAFTKAPKKSPNLAAFDFEHNIKCTQAYLNTKIYQEGLSEQFVDLLGDYFALYCKNIAFPELVTPVIISLRRYIKTSTNVKLNKRLSTVVEKLNQNSTFIQEKRSDVEFGPTNKSEVSRFLN-DVAWNKTPLGSYVAVQREVKEEKARLMRES 677
BLAST of DY258162 vs. ExPASy Swiss-Prot
Match: YKY4_SCHPO (Uncharacterized NOC2 family protein C1142.04 OS=Schizosaccharomyces pombe GN=SPAC1142.04 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 9.682e-12 Identity = 38/137 (27.74%), Postives = 75/137 (54.74%), Query Frame = 2 Query: 2 GIFIPVTSLVLDVLE--YKVSKEVGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQ 406 G+FIP+ + +VL+ Y K K +F ++ +L+++ +++ + +ELLS ++ ++ ISFPEL ++ ++F ++S L R + ++ +EQ +F+ +KR++ F+P D SVE F Q Sbjct: 502 GVFIPLAPSLFEVLDSSYVSRKAKASTLKPLDFDVELRASSSYLRTKVYQDGLIDQLLELLSEYYVLYATDISFPELVIPAIVRSKRFAKRSKNAKLNRGLLTLVNRLEQQSKFMTEKRNQQKFAPIDSDSVEQFAQ 638
BLAST of DY258162 vs. ExPASy Swiss-Prot
Match: NOC2L_HUMAN (Nucleolar complex protein 2 homolog OS=Homo sapiens GN=NOC2L PE=1 SV=3) HSP 1 Score: 69.707 bits (169), Expect = 2.817e-11 Identity = 46/153 (30.07%), Postives = 79/153 (51.63%), Query Frame = 2 Query: 2 GIFIPVTSLVLDVLEYKVSKEVGKPG----KDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTPFTQYY 448 G FIPV +L++ + KPG K NFS +KL L+ + +R+ V +L + ++ I FPEL ++ L+ F + V + R V++ + V++N ++ +R V+F ++QQ+VEA+ +L + G TP T YY Sbjct: 470 GAFIPVLPFILEMFQQVDFNR--KPGRMSSKPINFSVILKLSNVNLQEKAYRDGLVEQLYDLTLEYLHSQAHCIGFPELVLPVVLQLKSFLRECKVANYCRQVQQLLGKVQENSAYICSRRQRVSFGVSEQQAVEAWEKLTREEG-TPLTLYY 619 The following BLAST results are available for this feature:
BLAST of DY258162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DY258162 ID=DY258162; Name=DY258162; organism=Citrus clementina; type=EST; length=960bpback to top |