DY258530

Overview
NameDY258530
Unique NameDY258530
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length868
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258530_ssr177 microsatellite DY258530_ssr177:177..196. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1155 contig Ccv1_Contig1155:1..868. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258530 vs. ExPASy Swiss-Prot
Match: JKD_ARATH (Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 3.307e-69
Identity = 127/196 (64.80%), Postives = 142/196 (72.45%), Query Frame = 3
Query:  276 LQMMSGNAFTIPSSLGGFVHQEXXXXXXXXXXXXXXXXX----------------RNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSQTCGTREYKCDCGTLFFR 815
            +QM+ G+ F+I SS+GGFVHQE                                 RN PGTPDPDA+VIALSP TLMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKL+QR+ ++VIKKKVYICP KTCVHH+ SRALGDLTGIKKH+SRKHG            YAVQSDWKAH++TCGTREYKCDCGTLF R
Sbjct:    1 MQMIPGDPFSISSSMGGFVHQETHLHHLQQQIPDLNPNSNPNPNAKPNSSSAKKKRNQPGTPDPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSKQEVIKKKVYICPIKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCGTREYKCDCGTLFSR 196          
BLAST of DY258530 vs. ExPASy Swiss-Prot
Match: MGP_ARATH (Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 7.136e-64
Identity = 110/141 (78.01%), Postives = 123/141 (87.23%), Query Frame = 3
Query:  393 RNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSQTCGTREYKCDCGTLFFR 815
            RNLPG PDP+AEVIALSPKTLMATNRF+CEIC KGFQRDQNLQLHRRGHNLPWKL+QRT+K+V +K+VY+CPEK+CVHH P+RALGDLTGIKKHF RKHG            YAVQSDWKAHS+TCGTREY+CDCGT+F R
Sbjct:   44 RNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEV-RKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSR 183          
BLAST of DY258530 vs. ExPASy Swiss-Prot
Match: NUC_ARATH (Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.712e-63
Identity = 116/176 (65.91%), Postives = 129/176 (73.30%), Query Frame = 3
Query:  288 SGNAFTIPSSLGGFVHQEXXXXXXXXXXXXXXXXXRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHEPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSQTCGTREYKCDCGTLFFR 815
            SG+ F  P S     H E                 RNLPG PDP+AEVIALSP TLMATNRF+CE+C KGFQRDQNLQLHRRGHNLPWKL+QRT+K+V +K+VY+CPEKTCVHH  SRALGDLTGIKKHF RKHG            YAVQSDWKAHS+TCGTREY+CDCGT+F R
Sbjct:   11 SGSGFAQPQSSSTLDHDESLINPPLVKKK------RNLPGNPDPEAEVIALSPTTLMATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEV-RKRVYVCPEKTCVHHHSSRALGDLTGIKKHFCRKHGEKKWTCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSR 179          
BLAST of DY258530 vs. ExPASy Swiss-Prot
Match: STOP1_ARATH (Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.488e-13
Identity = 44/148 (29.73%), Postives = 68/148 (45.95%), Query Frame = 3
Query:  411 PDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLR---QRTNKDVIKK------KVYICPEKTC---VHHEPSRALGDLTGIKKHFSRKH-GXXXXXXXXXXXXYAVQSDWKAHSQTCGTREYKCDCGTLFFR 815
            P    E++ L  + ++A +   C IC KGF+RD NL++H RGH   +K      + NK+ +        K Y CP   C     H+  + L  +  +K H+ R H              ++V +D K H + CG  ++ C CGT F R
Sbjct:  224 PPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKESVPGSEPMLIKRYSCPFLGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSFTCSRCHTKKFSVIADLKTHEKHCGKNKWLCSCGTTFSR 371          
BLAST of DY258530 vs. ExPASy Swiss-Prot
Match: TT1_ARATH (Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana GN=TT1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.366e-11
Identity = 39/126 (30.95%), Postives = 57/126 (45.24%), Query Frame = 3
Query:  453 LMATNRFICEICNKGFQRDQNLQLHRRGHNL-----PWKLRQRTNKDVIKKKVYICPE--KTCVHHEPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSQTCGTREYKCDCGTLF 809
            L+    F C +C K F R  NLQ+H  GH       P  L+    + ++    Y C E  +  + H  S+ L D   ++ H+ RKHG             AV+ DW+ H + CG R + C CG+ F
Sbjct:  139 LIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAMLGIPCYCCVEGCRNHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSCRLCGKLLAVKGDWRTHEKNCGKR-WVCVCGSDF 263          
The following BLAST results are available for this feature:
BLAST of DY258530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
JKD_ARATH3.307e-6964.80Zinc finger protein JACKDAW OS=Arabidopsis thalian... [more]
MGP_ARATH7.136e-6478.01Zinc finger protein MAGPIE OS=Arabidopsis thaliana... [more]
NUC_ARATH2.712e-6365.91Zinc finger protein NUTCRACKER OS=Arabidopsis thal... [more]
STOP1_ARATH7.488e-1329.73Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Ara... [more]
TT1_ARATH5.366e-1130.95Protein TRANSPARENT TESTA 1 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2BA06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258530 ID=DY258530; Name=DY258530; organism=Citrus clementina; type=EST; length=868bp
CAGCAATCATAAGTTGTTGGAGTTTTCTTTTGAAATTGATCAAAACAAAA
CCAGATCTCTGTAACAAGAGTCCGAAATATATTTTTGTTTTTAGATTAAA
ATTTTGAGTTTTTTTTTCCTCCTTTCCTTCTCTTTTCTTGTCTTTTGGCT
TGAATCTCAGAGTCATCAGAATTTGAATATATATATATATATATATACCA
AACATTTATCAGCTTCTGTTTGGAGGAAAAAAAAAAGCACAAAACAAAAC
CCTTAGTTTTTTGCACTTTGATAGCTTGCAAATGATGTCTGGTAATGCTT
TTACAATACCCTCTTCCTTAGGAGGGTTTGTTCATCAAGAACAAAATCCC
AACCCTAACCCTAAACCTAATCAGGCTGCCAGTAAAAAGAAGAGGAATTT
ACCGGGAACTCCAGATCCAGATGCTGAGGTTATTGCTCTATCCCCAAAGA
CACTCATGGCAACCAACAGATTCATATGTGAAATATGCAATAAGGGTTTC
CAAAGAGACCAAAACTTACAGCTTCATCGAAGAGGACATAATCTTCCATG
GAAGCTGAGGCAAAGAACCAACAAAGACGTCATCAAGAAGAAAGTTTATA
TCTGCCCAGAAAAGACTTGTGTTCATCACGAACCATCGAGGGCTCTCGGT
GATTTGACGGGTATAAAGAAGCATTTTAGCAGAAAACATGGAGAAAAGAA
ATGGAAGTGTGAGAAATGTTCAAAGAAATATGCAGTTCAATCTGACTGGA
AAGCTCACTCCCAGACTTGTGGCACCCGAGAGTATAAGTGTGATTGTGGC
ACTTTATTTTTCAGGTATACGTGTAAATAAATTAAATTAATAAATGCTCA
TGAGTGGTATTGTTTCAN
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