DY258795

Overview
NameDY258795
Unique NameDY258795
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1244
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1244 contig Ccv1_Contig1244:1..1244. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258795 vs. ExPASy Swiss-Prot
Match: RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 3.992e-59
Identity = 126/199 (63.32%), Postives = 146/199 (73.37%), Query Frame = 2
Query:  413 QVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKNHDQTRKETEFALSALMEIPSQYKATIELNLLGRRKGNVPERVALPPPVYGATTSFHSPKPFHFYRFKPKC---TFLSRKVSLSAQLPPATSFNE*KSAFAPFALTNGKRNGPLVCGNPKLVCQMG 1000
            QVTRSVDT  G LSPQEQKTVDAIV+AS+LPLSIVLVGVGDGPWDMM+EFDDNIPARAFDNFQFVNFTEIM+KN  Q+ KETEFALSALMEIP QYKATIELNLLGRR G +PER  LPPP+ G ++S++SPKP     FKP           V  S   PP +S ++  +   P  L+N K +    CG+ +  C+ G
Sbjct:  254 QVTRSVDTENGQLSPQEQKTVDAIVQASKLPLSIVLVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMAKNKAQSLKETEFALSALMEIPQQYKATIELNLLGRRNGYIPERFPLPPPMRGGSSSYNSPKPSRLPSFKPSVPPHPTEGYHVRSSPVPPPTSSASD--NQLCPICLSNPK-DMAFGCGH-QTCCECG 448          
BLAST of DY258795 vs. ExPASy Swiss-Prot
Match: RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 2.861e-57
Identity = 125/196 (63.78%), Postives = 142/196 (72.45%), Query Frame = 2
Query:  413 QVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKNHDQTRKETEFALSALMEIPSQYKATIELNLLGRRKGNVPERVALPPPVYGATTSFHSPKPFHFYRFKPKCTFLSRKVSLSAQLPPATSFNE*KSAFAPFALTNGKRNGPLVCGNPKLVCQMG 1000
            QVTRSVDT  G LSPQEQKTVDAIVKAS LPLSIVLVGVGDGPWDMM+EFDDNIPARAFDNFQFVNFTEIMSKN DQ+RKETEFALSALMEIP QYKATIELNLLG R GN+P+R+ LPPPV    +SF S +  +F    P   F S+++S +  +              P  L+N K N    CG+ +  C+ G
Sbjct:  288 QVTRSVDTEHGRLSPQEQKTVDAIVKASTLPLSIVLVGVGDGPWDMMQEFDDNIPARAFDNFQFVNFTEIMSKNKDQSRKETEFALSALMEIPPQYKATIELNLLGVRNGNIPQRIPLPPPVQSG-SSFSSSRIPNFEPSVPPYPFESKQMSSADDI-----------QLCPICLSNPK-NMAFGCGH-QTCCECG 469          
BLAST of DY258795 vs. ExPASy Swiss-Prot
Match: CPNA2_CAEEL (Copine domain-containing protein 2 OS=Caenorhabditis elegans GN=cpna-2 PE=2 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 4.770e-20
Identity = 50/83 (60.24%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  479 AIVKASELPLSIVLVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKNHDQTRKETEFALSALMEIPSQYKATIELNLL 727
            AI  AS  PLSI++VGVGDGPW+MM  FDDNIP R FDNF FV+F ++M    +    +  FAL+ALMEIP QYKA  EL LL
Sbjct: 7463 AIAAASHYPLSIIMVGVGDGPWNMMGRFDDNIPKRLFDNFHFVDFHKVM---FNAPNADASFALNALMEIPDQYKAIKELGLL 7542          
The following BLAST results are available for this feature:
BLAST of DY258795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RGLG2_ARATH3.992e-5963.32E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis t... [more]
RGLG1_ARATH2.861e-5763.78E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis t... [more]
CPNA2_CAEEL4.770e-2060.24Copine domain-containing protein 2 OS=Caenorhabdit... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3CA05FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258795 ID=DY258795; Name=DY258795; organism=Citrus clementina; type=EST; length=1244bp
ATCATTTGCCCCCGTCATTGAAATGGCTATGTCTATCGTTGAGCAGAGTG
GTGGCCAGTACCATGTATTATTAATAATTGCTGATGGGCAGGTATTTGCT
TCTAGTGTCAATATAAACTCATTATAGCGAACAATTATTGGAAGACTTGT
TACTCAAACAACTAGCTAAATTTAGTGATAAATGAGAAAACAATTAAAAA
AACTTATTTCATTGTGGACAGAGTCTGTGATCACCCTGCATTTAGAGCCA
TCTTTTTATGAAATAATACGTGGCACTTATGATGACACTGGAGTGCCACA
TGTAATTGCTTAGAAAGAGTGGCACTAGCTCTCTCCAGAATGACAGCTAG
GTAGTTTTTGTTGCAATGATATGTTCCTCCAATGGTCATCATACCCACAT
GGATTATGGCCGCAGGTAACTAGAAGTGTTGATACAGTGCGTGGTTGCTT
AAGTCCTCAGGAGCAGAAGACAGTTGATGCAATTGTAAAAGCAAGCGAGC
TTCCCTTGTCAATTGTGCTAGTTGGGGTAGGAGATGGGCCCTGGGACATG
ATGAAAGAATTTGATGATAACATTCCTGCTCGAGCATTTGATAATTTTCA
GTTTGTGAATTTTACAGAAATCATGTCAAAGAATCATGATCAAACTCGAA
AGGAGACAGAATTTGCGCTTTCTGCTTTAATGGAAATTCCTTCTCAGTAT
AAAGCAACAATAGAGCTTAACCTACTGGGTCGCCGGAAGGGAAATGTTCC
AGAGAGGGTTGCCCTCCCTCCACCTGTATATGGTGCAACCACATCTTTTC
ACAGCCCAAAACCTTTTCATTTCTACCGTTTTAAGCCCAAATGCACCTTC
CTATCAAGAAAAGTCAGCCTGTCAGCTCAGCTCCCTCCTGCTACAAGTTT
CAACGAATGAAAATCAGCCTTTGCTCCCTTTGCCCTAACTAATGGGAAAA
GAAATGGGCCTTTGGTTTGCGGAAATCCCAAACTTGTTTGCCAAATGGGG
GAAAAAAACCTTTAAATTTTATCCCCCCTTTTTGTCCCAAACCCCAATCC
CCAAACCCCAAAATTAAACCTTTCCCCAAATCCTGCGCCCTAACCAACAA
AAGAACCCAAAAATTTTCTTTTTTTTTTTTTTTTTTTTTAAAAAAAAAGA
AAAATATTATATAAAATTTTTTTCCTGTAAAATTTCCCCCCTTTTTTTGG
AAAAAAATAAAAATTTTTCTGTGGTGAGAGGCGGTCCCTCTGAA
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