DY258836
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY258836 vs. ExPASy Swiss-Prot
Match: ARFH_ARATH (Auxin response factor 8 OS=Arabidopsis thaliana GN=ARF8 PE=2 SV=2) HSP 1 Score: 124.02 bits (310), Expect = 1.851e-27 Identity = 73/133 (54.89%), Postives = 89/133 (66.92%), Query Frame = 3 Query: 105 LPS--PSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSGAGPSMLRQQFPQQSLGSKYEPSQVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWE 497 LPS P F+ ++ ++ +S++ S QN L S + + + L GAG S +VYKSGSVGRSLDISRFSSY+ELREELG+MF IEG EDPLRSGWQLVFVD+END+LLLGDDPWE Sbjct: 650 LPSTVPRFASSSGDAEASPMSLTDSGFQNSLYSCMQDTTHEL-LHGAGQI--------NSSNQTKNFVKVYKSGSVGRSLDISRFSSYHELREELGKMFAIEGLLEDPLRSGWQLVFVDKENDILLLGDDPWE 773
BLAST of DY258836 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSJ (Auxin response factor 12 OS=Oryza sativa subsp. japonica GN=ARF12 PE=2 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 9.189e-27 Identity = 77/145 (53.10%), Postives = 89/145 (61.38%), Query Frame = 3 Query: 63 QIRTDELLQRQQSNLPSPSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSGAGPSMLRQQFPQQSLGSKYEPSQVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWE 497 Q+ + LL NL S + S N ST S S M G L + SG L N P+ + F + VYKSGSVGRSLDI+RFS+Y ELREELGQMFGI+G+ +DP RSGWQLVFVDRENDVLLLGDDPWE Sbjct: 660 QVDSSSLLYNMVPNLTS-NVSDGNL---STIPSGSTYLQNAMYGCLDDSSGLLQNTGENDPAT--RTFVK-----------VYKSGSVGRSLDITRFSNYAELREELGQMFGIKGQLDDPDRSGWQLVFVDRENDVLLLGDDPWE 787
BLAST of DY258836 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSI (Auxin response factor 12 OS=Oryza sativa subsp. indica GN=ARF12 PE=2 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 9.189e-27 Identity = 77/145 (53.10%), Postives = 89/145 (61.38%), Query Frame = 3 Query: 63 QIRTDELLQRQQSNLPSPSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSGAGPSMLRQQFPQQSLGSKYEPSQVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWE 497 Q+ + LL NL S + S N ST S S M G L + SG L N P+ + F + VYKSGSVGRSLDI+RFS+Y ELREELGQMFGI+G+ +DP RSGWQLVFVDRENDVLLLGDDPWE Sbjct: 658 QVDSSSLLYNMVPNLTS-NVSDGNL---STIPSGSTYLQNAMYGCLDDSSGLLQNTGENDPAT--RTFVK-----------VYKSGSVGRSLDITRFSNYAELREELGQMFGIKGQLDDPDRSGWQLVFVDRENDVLLLGDDPWE 785
BLAST of DY258836 vs. ExPASy Swiss-Prot
Match: ARFF_ARATH (Auxin response factor 6 OS=Arabidopsis thaliana GN=ARF6 PE=2 SV=2) HSP 1 Score: 117.472 bits (293), Expect = 1.733e-25 Identity = 57/78 (73.08%), Postives = 67/78 (85.90%), Query Frame = 3 Query: 273 QSLGSKYEPS----QVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPW 494 ++LGS+ S +VYKSGS GRSLDIS+FSSY+ELR EL +MFG+EG+ EDP+RSGWQLVFVDRENDVLLLGDDPW Sbjct: 786 ENLGSENPQSNTFVKVYKSGSFGRSLDISKFSSYHELRSELARMFGLEGQLEDPVRSGWQLVFVDRENDVLLLGDDPW 863
BLAST of DY258836 vs. ExPASy Swiss-Prot
Match: ARFY_ORYSJ (Auxin response factor 25 OS=Oryza sativa subsp. japonica GN=ARF25 PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 8.600e-25 Identity = 71/144 (49.31%), Postives = 91/144 (63.19%), Query Frame = 3 Query: 66 IRTDELLQRQQSNLPSPSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSGAGPSMLRQQFPQQSLGSKYEPSQVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWE 497 I TD + +P +S A D +TE +++ S N LG G+ N LN PS G+ + +VYKSGS+GRSLDISRFSSY ELR EL ++FG+EG+ EDP+RSGWQLVFVDREND+LL+GDDPW+ Sbjct: 711 IITDANRETDTMAIPLLRYSGA---DLTTENTLATS---NCLGE--SGTFNPLNNISVNPSQ----------GATFV--KVYKSGSLGRSLDISRFSSYCELRSELERLFGLEGQLEDPVRSGWQLVFVDRENDILLVGDDPWQ 834
BLAST of DY258836 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSJ (Auxin response factor 6 OS=Oryza sativa subsp. japonica GN=ARF6 PE=1 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 2.502e-24 Identity = 50/65 (76.92%), Postives = 62/65 (95.38%), Query Frame = 3 Query: 303 QVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWE 497 +VYKSG+VGR LDI+RFSSY+ELR E+G++FG+EG+ EDPLRSGWQLVFVDRE+DVLL+GDDPW+ Sbjct: 781 KVYKSGTVGRLLDITRFSSYHELRSEVGRLFGLEGQLEDPLRSGWQLVFVDREDDVLLVGDDPWQ 845
BLAST of DY258836 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSI (Auxin response factor 6 OS=Oryza sativa subsp. indica GN=ARF6 PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 2.502e-24 Identity = 50/65 (76.92%), Postives = 62/65 (95.38%), Query Frame = 3 Query: 303 QVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWE 497 +VYKSG+VGR LDI+RFSSY+ELR E+G++FG+EG+ EDPLRSGWQLVFVDRE+DVLL+GDDPW+ Sbjct: 781 KVYKSGTVGRLLDITRFSSYHELRSEVGRLFGLEGQLEDPLRSGWQLVFVDREDDVLLVGDDPWQ 845
BLAST of DY258836 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSJ (Auxin response factor 17 OS=Oryza sativa subsp. japonica GN=ARF17 PE=2 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 3.268e-24 Identity = 50/65 (76.92%), Postives = 62/65 (95.38%), Query Frame = 3 Query: 303 QVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWE 497 +VYKSG+ GRSLDI+RFSSY+ELR ELG++FG+EG+ E+PLRSGWQLVFVDRE+DVLL+GDDPW+ Sbjct: 790 KVYKSGTYGRSLDITRFSSYHELRRELGRLFGLEGQLENPLRSGWQLVFVDREDDVLLVGDDPWQ 854
BLAST of DY258836 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSI (Auxin response factor 17 OS=Oryza sativa subsp. indica GN=ARF17 PE=2 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 3.268e-24 Identity = 50/65 (76.92%), Postives = 62/65 (95.38%), Query Frame = 3 Query: 303 QVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWE 497 +VYKSG+ GRSLDI+RFSSY+ELR ELG++FG+EG+ E+PLRSGWQLVFVDRE+DVLL+GDDPW+ Sbjct: 790 KVYKSGTYGRSLDITRFSSYHELRRELGRLFGLEGQLENPLRSGWQLVFVDREDDVLLVGDDPWQ 854
BLAST of DY258836 vs. ExPASy Swiss-Prot
Match: ARFS_ARATH (Auxin response factor 19 OS=Arabidopsis thaliana GN=ARF19 PE=1 SV=2) HSP 1 Score: 99.7525 bits (247), Expect = 3.739e-20 Identity = 42/66 (63.64%), Postives = 56/66 (84.85%), Query Frame = 3 Query: 300 SQVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWE 497 ++V K GSVGRS+D++R+S Y+ELR +L +MFGIEG+ EDPL S W+LV+ D END+LL+GDDPWE Sbjct: 961 TKVQKRGSVGRSIDVTRYSGYDELRHDLARMFGIEGQLEDPLTSDWKLVYTDHENDILLVGDDPWE 1026 The following BLAST results are available for this feature:
BLAST of DY258836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 23
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Sequences
The
following sequences are available for this feature:
EST sequence >DY258836 ID=DY258836; Name=DY258836; organism=Citrus clementina; type=EST; length=1266bpback to top |