DY258881
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: RH53_ARATH (DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana GN=RH53 PE=2 SV=1) HSP 1 Score: 372.474 bits (955), Expect = 1.125e-102 Identity = 183/223 (82.06%), Postives = 197/223 (88.34%), Query Frame = 3 Query: 3 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 671 NPLCLVLAPTRELA+QVEKEF ESAPSLDTIC+YGGTPI QMR LDYGVD VGTPGRVIDL+KR ALNLSEVQFVVLDEADQML VGFAEDVE+ILE+LP+ RQ MMFSATMP WIRSLT KYL NPLTVDLVGDSDQKLADGI YSI Y + SIIG L+TEHAKGGKCIVFTQTKRDADRL++A+A+S+ CE LHGDISQSQRERTL+ FRDG FN Sbjct: 178 NPLCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYALARSFKCEALHGDISQSQRERTLAGFRDGHFN 400
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: RH9_ARATH (DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana GN=RH9 PE=2 SV=1) HSP 1 Score: 362.073 bits (928), Expect = 1.521e-99 Identity = 176/223 (78.92%), Postives = 193/223 (86.55%), Query Frame = 3 Query: 3 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 671 NP CLVLAPTRELA+QVEKEF ESAPSLDTIC+YGGTPI QMR L+YG+D VGTPGR+IDL+KR ALNLSEVQFVVLDEADQML VGFAEDVE+IL++LP RQ MMFSATMP WIRSLT KYL NPLT+DLVGDSDQKLADGI +YSIA Y + SIIG L+ EH KGGKCIVFTQTKRDADRLA +AKSY CE LHGDISQ+QRERTL+ FRDG F+ Sbjct: 190 NPQCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKEHGKGGKCIVFTQTKRDADRLAFGLAKSYKCEALHGDISQAQRERTLAGFRDGNFS 412
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: RH53_ORYSJ (DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp. japonica GN=Os07g0143700 PE=2 SV=2) HSP 1 Score: 354.369 bits (908), Expect = 3.171e-97 Identity = 171/223 (76.68%), Postives = 197/223 (88.34%), Query Frame = 3 Query: 3 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 671 NPL ++LAPTRELA+QVEKEF ESAP LD++CVYGG PISHQMRAL+YGVD VVGTPGR+IDL++R LNLSE+QFVVLDEADQML+VGF EDVEVI+E LPQNRQ M+FSATMP WIR +T+KYLK+P+ +DLVGD DQKL +GI LYSIA+ Y KPSI+G LI EHA GGKCIVFTQTKR+ADRLA+AM +SY C+ LHGDISQ+QRERTLS FRDGRFN Sbjct: 158 NPLAIILAPTRELARQVEKEFKESAP-LDSLCVYGGVPISHQMRALNYGVDVVVGTPGRIIDLLRRGVLNLSEIQFVVLDEADQMLAVGFDEDVEVIMENLPQNRQSMLFSATMPSWIRKITSKYLKDPIIIDLVGDEDQKLPEGISLYSIASEHYGKPSILGPLIKEHANGGKCIVFTQTKREADRLAYAMGRSYACQALHGDISQNQRERTLSGFRDGRFN 379
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: RH9_ORYSJ (DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp. japonica GN=Os12g0611200 PE=3 SV=1) HSP 1 Score: 333.183 bits (853), Expect = 7.565e-91 Identity = 160/222 (72.07%), Postives = 194/222 (87.39%), Query Frame = 3 Query: 6 PLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 671 PL +VLAPTRELAKQVE+EF +S+ +++TICVYGGTPIS Q+R L+YGVD V+GTPGRVIDL+KR ALNLSEV+FVVLDEADQMLSVGF EDVE IL+R+P RQ +MFSATMP WI+ LT KYLKNP+T+DLVG+ DQKLA+GI LYSIA+ + KP+++G+LI EHAKGGKCIVFTQTKRDADRL++ M +S+ C+ LHGDI+Q+QRERTL FR+G FN Sbjct: 173 PLAIVLAPTRELAKQVEREFSDSS-NVETICVYGGTPISQQIRQLNYGVDVVIGTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQTLMFSATMPTWIQRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGHAKPAVLGELIKEHAKGGKCIVFTQTKRDADRLSYTMGRSFQCQALHGDITQAQRERTLKGFREGHFN 393
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: RH3_ARATH (DEAD-box ATP-dependent RNA helicase 3 OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2) HSP 1 Score: 283.493 bits (724), Expect = 6.874e-76 Identity = 144/221 (65.16%), Postives = 170/221 (76.92%), Query Frame = 3 Query: 6 PLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 668 P LVLAPTRELAKQVEKE ESAP L T+CVYGG + Q AL GVD VVGTPGR+IDLI+ +L L EV+++VLDEADQML+VGF E VE ILE LP RQ M+FSATMP W++ L KYL NPL +DLVGD D+KLA+GI LY+IAT+ K +I+ LIT +AKGGK IVFTQTKRDAD ++ A++ S E LHGDISQ QRERTL+AFR G+F Sbjct: 181 PKFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFRQGKF 401
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: RH3_ORYSJ (DEAD-box ATP-dependent RNA helicase 3 OS=Oryza sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2) HSP 1 Score: 280.796 bits (717), Expect = 4.456e-75 Identity = 139/221 (62.90%), Postives = 169/221 (76.47%), Query Frame = 3 Query: 6 PLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 668 P LVLAPTRELAKQVEKE ESAP L T+CVYGG + Q AL GVD VVGTPGR+IDLI +L L EV+++VLDEADQML+VGF EDVE IL++LP RQ M+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI LY+I + K +++ LIT +AKGGK IVFT+TKRDAD ++ A+ S E LHGDISQ QRERTL+ FR G+F Sbjct: 181 PRVLVLAPTRELAKQVEKEIKESAPKLSTVCVYGGVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQLPAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLITVYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKF 401
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: RH7_SPIOL (DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia oleracea GN=RH7 PE=2 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 1.183e-43 Identity = 100/226 (44.25%), Postives = 137/226 (60.62%), Query Frame = 3 Query: 6 PLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP--QNRQGMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 668 P LVL PTRELA QV +F + A L VYGG P Q+ +L GVD VVGTPGRV DL+++ L L + F VLDEAD+ML +GF +DVE+IL ++ Q ++FSAT+P W++ ++ ++LK+ TVDLV D K + + I S +P +I +I + GG+ I+FT+TK A +LA + PLHGDI Q+QRE TL FR G+F Sbjct: 186 PSVLVLLPTRELATQVLADFQVYGGAVGLTACSVYGGAPFHSQISSLTRGVDIVVGTPGRVKDLLEKGVLKLGSLLFRVLDEADEMLKMGFVDDVELILGKVDHVSKVQTLLFSATLPSWVKQISTRFLKSAKKTVDLVSDQKMKASISVRHIVIPCSASARPDLIPDIIRCYGSGGRSIIFTETKESASQLAGLLT---GARPLHGDIQQTQREVTLKGFRTGKF 408
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DDX21_RAT (Nucleolar RNA helicase 2 OS=Rattus norvegicus GN=Ddx21 PE=2 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 3.443e-43 Identity = 96/228 (42.11%), Postives = 137/228 (60.09%), Query Frame = 3 Query: 6 PLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQNRQGMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 668 P LVLAPTRELA QV K+F + L C YGGTP Q+ + G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL + N Q ++FSAT P W+ ++ KY+K+ VDL+G QK A + +I E+ ++IG +I ++ G+ I+F +TK+DA L+ + + LHGDI Q QRE TL FR+G F Sbjct: 257 PQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGNF 484
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DDX21_MOUSE (Nucleolar RNA helicase 2 OS=Mus musculus GN=Ddx21 PE=1 SV=2) HSP 1 Score: 174.866 bits (442), Expect = 3.443e-43 Identity = 96/228 (42.11%), Postives = 137/228 (60.09%), Query Frame = 3 Query: 6 PLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQNRQGMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 668 P LVLAPTRELA QV K+F + L C YGGTP Q+ + G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL + N Q ++FSAT P W+ ++ KY+K+ VDL+G QK A + +I E+ ++IG +I ++ G+ I+F +TK+DA L+ + + LHGDI Q QRE TL FR+G F Sbjct: 333 PQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGNF 560
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DDX50_MOUSE (ATP-dependent RNA helicase DDX50 OS=Mus musculus GN=Ddx50 PE=2 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 7.671e-43 Identity = 96/229 (41.92%), Postives = 137/229 (59.83%), Query Frame = 3 Query: 3 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQNRQGMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 668 +P LVLAPTRELA QV K+F + L C YGGT Q+ + G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ N Q ++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++IG ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G F Sbjct: 208 SPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINQIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSF 436 The following BLAST results are available for this feature:
BLAST of DY258881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY258881 ID=DY258881; Name=DY258881; organism=Citrus clementina; type=EST; length=671bpback to top |