DY259756

Overview
NameDY259756
Unique NameDY259756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length996
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14610 contig Ccv1_Contig14610:1011..2006. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259756 vs. ExPASy Swiss-Prot
Match: AB39G_ARATH (ABC transporter G family member 39 OS=Arabidopsis thaliana GN=ABCG39 PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 2.099e-73
Identity = 125/214 (58.41%), Postives = 156/214 (72.90%), Query Frame = 2
Query:    2 YWSYLRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEI 643
            YWSY R+PQYNAIRF MT+VI + FGLI+W  G KT  +QDL N FGAMY+  +FLG  NA +V P I +ERTV+YRE+AAGM++A+PYA++QVA                  +MIG  W + KF  F+Y+M  SFI FTLYGMM++ALTP  Q+A I +SFFLS+WNLFSGFL+ R  IP+WWRWYYW +PVAW LYGL+T QVGD +S+V I
Sbjct: 1188 YWSYWRHPQYNAIRFLMTVVIGVLFGLIFWQIGTKTENEQDLNNFFGAMYAAVLFLGALNAATVQPAIAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLILYSMIGCNWTMAKFLWFYYYMLTSFIYFTLYGMMLMALTPNYQIAGICMSFFLSLWNLFSGFLIPRPQIPIWWRWYYWATPVAWTLYGLITSQVGDKDSMVHI 1401          
BLAST of DY259756 vs. ExPASy Swiss-Prot
Match: AB34G_ARATH (ABC transporter G family member 34 OS=Arabidopsis thaliana GN=ABCG34 PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 8.820e-72
Identity = 122/214 (57.01%), Postives = 154/214 (71.96%), Query Frame = 2
Query:    2 YWSYLRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEI 643
            YWS  R PQYNAIRF MT+VI + FGL++W  G K  K+QDL N FGAMY+  +FLG +NA +V P + +ERTV+YRE+AAGM++A+PYA++QVA                  +MIG+ W + KF  F+Y+M   F+ FTLYGMM+VALTP  Q+A I LSFFLS WNLFSGFL+ R  IP+WWRWYYW SPVAW LYG++T QVGD +S+V I
Sbjct: 1187 YWSNWRYPQYNAIRFLMTVVIGVLFGLLFWQTGTKIEKEQDLNNFFGAMYAAVLFLGATNAATVQPAVAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLILYSMIGYDWTVVKFFWFYYYMLTCFVYFTLYGMMLVALTPNYQIAGICLSFFLSFWNLFSGFLIPRPQIPIWWRWYYWASPVAWTLYGIITSQVGDRDSIVHI 1400          
BLAST of DY259756 vs. ExPASy Swiss-Prot
Match: PDR2_NICPL (Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 3.468e-68
Identity = 118/214 (55.14%), Postives = 152/214 (71.03%), Query Frame = 2
Query:    2 YWSYLRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEI 643
            +WSY RN QYNAIRF MT++I I FG+I+W+KG +  +QQDL NL GA Y+  +FLG +NA +V  V+ +ERTV+YRERAAGM++ +PYA AQVA                  +MIG++W   KF  F+YF++  F  F++YGMM+VALTPG Q+A IV+SFFLS WNLFSGFL+ R  IPVWWRWYYW SPVAW +YG+   QVGD    +E+
Sbjct: 1194 HWSYWRNSQYNAIRFFMTVIIGILFGVIFWNKGNQIHRQQDLLNLLGATYAAVMFLGATNASAVQSVVAIERTVFYRERAAGMYSELPYAFAQVAIETIYVAIQTFVYSLLLFSMIGYQWTAVKFFYFYYFIFMCFTYFSMYGMMVVALTPGYQIAAIVMSFFLSFWNLFSGFLIPRPLIPVWWRWYYWASPVAWTIYGIFASQVGDRTDELEL 1407          
BLAST of DY259756 vs. ExPASy Swiss-Prot
Match: PDR1_TOBAC (Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 2.104e-65
Identity = 112/210 (53.33%), Postives = 145/210 (69.05%), Query Frame = 2
Query:    2 YWSYLRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLES 631
            +WSY RNP Y A+RF  T  IA+ FG ++WD G K SK QDL N  G+MY+  +FLG  NA SV PV+ +ERTV+YRERAAGM++A+PYA  QV+                  AMIGF+W++GKF  + + M+ + + FT YGMM VA+TP Q VA+IV +FF  VWNLFSGF++ R  +PVWWRWYYW +PVAW LYGLV  Q GD+++
Sbjct: 1172 HWSYWRNPAYTAVRFIFTTFIALIFGTMFWDLGTKVSKSQDLLNAMGSMYAAVLFLGVQNASSVQPVVAIERTVFYRERAAGMYSAIPYAFGQVSIEIPYIFVQSVFYGIIVYAMIGFEWDVGKFFWYLFIMFFTLLYFTFYGMMGVAVTPNQNVASIVAAFFYGVWNLFSGFIIPRPRMPVWWRWYYWANPVAWTLYGLVASQFGDIQT 1381          
BLAST of DY259756 vs. ExPASy Swiss-Prot
Match: AB40G_ARATH (ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 3.968e-64
Identity = 111/208 (53.37%), Postives = 140/208 (67.31%), Query Frame = 2
Query:    2 YWSYLRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDL 625
            +WSY RNP Y A+RF  T+ IA+ FG ++WD G KT  +QDL N  G+MY+  +FLG  NA SV PV+ VERTV+YRE+AAGM++AMPYA AQV                   AMIGF+W   KF  + +FM+ SF+ FT YGMM VA+TP   +A++V S F  +WNLFSGFL+ R  +PVWW WYYWL PVAW LYGL+  Q GD+
Sbjct: 1160 HWSYWRNPPYTAVRFLFTIGIALMFGTMFWDLGGKTKTRQDLSNAMGSMYTAVLFLGLQNAASVQPVVNVERTVFYREQAAGMYSAMPYAFAQVFIEIPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAVAMTPNHHIASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQFGDI 1367          
BLAST of DY259756 vs. ExPASy Swiss-Prot
Match: PDR1_NICPL (Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.969e-63
Identity = 111/209 (53.11%), Postives = 142/209 (67.94%), Query Frame = 2
Query:    2 YWSYLRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLE 628
            +WSY RNP Y A+R   T  IA+ FG ++WD G K S+ QDL N  G+MY+  +FLG  N+ SV PV+ VERTV+YRE+AAGM++A+PYA AQV                   +MIGF+W + KF   F+FM+ +F+ FT +GMM VA+TP Q VA+IV  FF +VWNLFSGF+V R  IP+WWRWYYW  P+AW LYGLV  Q GDL+
Sbjct: 1173 HWSYWRNPAYTAVRLIFTTFIALIFGTMFWDIGTKVSRNQDLVNAMGSMYAAVLFLGVQNSSSVQPVVSVERTVFYREKAAGMYSAIPYAFAQVLIEIPYIFVQATVYGLIVYSMIGFEWTVAKFFWDFFFMFFTFLYFTFFGMMTVAVTPNQNVASIVAGFFYTVWNLFSGFIVPRPRIPIWWRWYYWGCPIAWTLYGLVASQFGDLQ 1381          
BLAST of DY259756 vs. ExPASy Swiss-Prot
Match: PDR4_ORYSJ (Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 9.774e-63
Identity = 107/212 (50.47%), Postives = 143/212 (67.45%), Query Frame = 2
Query:    5 WSYLRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVE 640
            WSY RNP Y A+R   T+VIA+ FG ++W+ G +T KQQDL N  G+MY+  +++G  N+ SV PV+ VERTV+YRERAAGM++A PYA  QVA                  +MIGF+W + KF  + +FM+ + + FT YGMM V LTP + +A I+ S F +VWNLFSG+L+ R  IPVWWRWY W+ PVAW LYGLV  Q GD++ ++E
Sbjct: 1188 WSYWRNPSYTAVRLLFTIVIALMFGTMFWNLGTRTKKQQDLFNAMGSMYAAVLYIGVQNSGSVQPVVVVERTVFYRERAAGMYSAFPYAFGQVAIELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWYLFFMYFTLLYFTFYGMMAVGLTPNESIAAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYCWICPVAWTLYGLVASQFGDIQHVLE 1399          
BLAST of DY259756 vs. ExPASy Swiss-Prot
Match: PDR2_ORYSJ (Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.667e-62
Identity = 112/206 (54.37%), Postives = 136/206 (66.02%), Query Frame = 2
Query:    8 SYLRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDL 625
            SY RNP YNAIR   T VIA+ FG I+WD G KT K QDL N  G+MYS  +F+G  N+ SV PV+ VERTV+YRERAAGM++A PYA  QVA                  +MIGFKW   KF  + +FM+ +F+ FT YGMM V LTP   VA+IV S F  +WNLFSGF++ R  +P+WWRWY W+ PVAW LYGLV  Q GD+
Sbjct: 1204 SYWRNPPYNAIRLFFTTVIALLFGTIFWDLGGKTGKSQDLFNAMGSMYSAVLFIGVLNSQSVQPVVSVERTVFYRERAAGMYSAFPYAFGQVAIEFPYTLVQSIIYGIIVYSMIGFKWTAAKFFWYLFFMFFTFLYFTFYGMMAVGLTPSYHVASIVSSAFYGIWNLFSGFIIPRPKVPIWWRWYCWICPVAWTLYGLVASQFGDI 1409          
BLAST of DY259756 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSJ (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.843e-61
Identity = 115/256 (44.92%), Postives = 152/256 (59.38%), Query Frame = 2
Query:    8 SYLRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIP*W**ILK*Q*NHSSKIIMISERFHSCR*YQPIGWMAVFLVGFA 775
            SY RNP YNA+RF  T VIA+ FG I+WD G K +K QDL N  G+MY+  +F+G  N  SV PV+ VERTV+YRERAAGM++A PYA  QV                   AMIGF+W   KF  + +FM  + + FT YGMM V LTP   +A+IV S F ++WNLFSGF++ R  +P+WWRWY W  PVAW LYGLV  Q GD+E+ +E               + + +  E +   + +  +GW+A  +  FA
Sbjct: 1197 SYWRNPPYNAVRFFFTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDIETPME-------------DGTPVKVFVENYFGFK-HSWLGWVATVVAAFA 1438          
BLAST of DY259756 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSI (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.843e-61
Identity = 115/256 (44.92%), Postives = 152/256 (59.38%), Query Frame = 2
Query:    8 SYLRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIP*W**ILK*Q*NHSSKIIMISERFHSCR*YQPIGWMAVFLVGFA 775
            SY RNP YNA+RF  T VIA+ FG I+WD G K +K QDL N  G+MY+  +F+G  N  SV PV+ VERTV+YRERAAGM++A PYA  QV                   AMIGF+W   KF  + +FM  + + FT YGMM V LTP   +A+IV S F ++WNLFSGF++ R  +P+WWRWY W  PVAW LYGLV  Q GD+E+ +E               + + +  E +   + +  +GW+A  +  FA
Sbjct: 1197 SYWRNPPYNAVRFFFTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDIETPME-------------DGTPVKVFVENYFGFK-HSWLGWVATVVAAFA 1438          
The following BLAST results are available for this feature:
BLAST of DY259756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
AB39G_ARATH2.099e-7358.41ABC transporter G family member 39 OS=Arabidopsis ... [more]
AB34G_ARATH8.820e-7257.01ABC transporter G family member 34 OS=Arabidopsis ... [more]
PDR2_NICPL3.468e-6855.14Pleiotropic drug resistance protein 2 OS=Nicotiana... [more]
PDR1_TOBAC2.104e-6553.33Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
AB40G_ARATH3.968e-6453.37ABC transporter G family member 40 OS=Arabidopsis ... [more]
PDR1_NICPL1.969e-6353.11Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR4_ORYSJ9.774e-6350.47Pleiotropic drug resistance protein 4 OS=Oryza sat... [more]
PDR2_ORYSJ1.667e-6254.37Probable pleiotropic drug resistance protein 2 OS=... [more]
PDR3_ORYSJ1.843e-6144.92Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR3_ORYSI1.843e-6144.92Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YB16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259756 ID=DY259756; Name=DY259756; organism=Citrus clementina; type=EST; length=996bp
GTATTGGTCTTATTTGAGAAACCCTCAGTACAATGCTATCCGATTTGGCA
TGACTCTTGTCATTGCCATTTTCTTTGGTTTAATCTACTGGGACAAAGGA
CAGAAGACTTCCAAACAACAAGATCTGCAGAATCTTTTTGGAGCTATGTA
TTCTATTTGTATTTTCCTTGGAACCAGCAATGCCATATCCGTGATACCCG
TTATCTGCGTTGAGAGAACAGTATACTACCGTGAAAGAGCCGCAGGGATG
TTTGCTGCAATGCCTTATGCACTTGCTCAAGTAGCCGTAGAGATAATATA
TGTATCAGTTCAAAGTGTCGTGTATGTTCTTATCCTTTACGCGATGATTG
GATTCAAGTGGGAGCTGGGAAAATTCTGCTTGTTCTTCTACTTCATGTGG
GCGTCTTTTATCATTTTCACATTGTACGGAATGATGATTGTCGCATTGAC
TCCTGGCCAGCAAGTTGCTACCATTGTCTTGTCCTTCTTCCTTAGTGTAT
GGAACTTGTTCTCCGGTTTCCTCGTTGCCAGATCGGATATTCCTGTCTGG
TGGAGGTGGTACTACTGGCTTTCTCCGGTGGCTTGGAATCTGTATGGCCT
TGTGACTTGTCAAGTTGGTGACTTAGAGTCACTTGTGGAGATTCCCTGAT
GGTAATAAATACTAAAATGACAGTGAAACCATTCATCCAAGATAATTATG
ATTTCAGAAAGATTTCATTCCTGTCGTTAATACCAGCCCATTGGCTGGAT
GGCCGTGTTCCTGGTTGGGTTTGCCCATGCCCACCAAGGCATTCACCTTC
CAAAGGAAAAAAACCCACCTCAATTCTTAAAAAAGGAACAACCAACCGAA
CCCGGTGGGGAAAACAAAAGGTATCCCACTTTTTTTTTCCCTTCGAACTT
CCCCTTTTTCACTTATATAATTTACTTTCGAAACACAAAATGAAGGTTTC
AAAAGGACCTCACGCCAACAAAACAAACCAAAAAATCTCTACCGAA
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