DY259917

Overview
NameDY259917
Unique NameDY259917
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length820
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259917 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.170e-36
Identity = 66/94 (70.21%), Postives = 73/94 (77.66%), Query Frame = 1
Query:  118 QNQAAGTGIAAS-QLQAQGNRPARGTTQGSLNHQECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGGPKCP 396
            QNQ +   I    Q Q Q N    G ++G L+ Q+C PKC YRCS TSYKKPC+FFCQKCCAKCLCVPAGTYGNKQ+CPCYNNWKTKRGGPKCP
Sbjct:   19 QNQVSRANIMRDEQQQQQRNNQLYGVSEGRLHPQDCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112          
BLAST of DY259917 vs. ExPASy Swiss-Prot
Match: RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.457e-28
Identity = 48/64 (75.00%), Postives = 54/64 (84.38%), Query Frame = 1
Query:  205 LNHQECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGGPKCP 396
            L   +C P+C YRCSATS+KKPC+FFCQKCCA CLCVP G YGNKQ+CPCYNNWKT+ G PKCP
Sbjct:   33 LRPTDCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96          
BLAST of DY259917 vs. ExPASy Swiss-Prot
Match: GASA4_ARATH (Gibberellin-regulated protein 4 OS=Arabidopsis thaliana GN=GASA4 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.305e-23
Identity = 42/66 (63.64%), Postives = 46/66 (69.70%), Query Frame = 1
Query:  199 GSLNHQECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGGPKCP 396
            GSL   +C  +C  RC  T Y K C+ FC KCC KCLCVP G YGNKQ C CYNNWKT+ GGPKCP
Sbjct:   41 GSLKRTQCPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGPKCP 106          
BLAST of DY259917 vs. ExPASy Swiss-Prot
Match: SNAK1_SOLTU (Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.392e-13
Identity = 30/59 (50.85%), Postives = 35/59 (59.32%), Query Frame = 1
Query:  220 CAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGGPKCP 396
            C  KC  RCS       CL +C  CC +C CVP+GTYGNK  CPCY + K  +G  KCP
Sbjct:   30 CDSKCKLRCSKAGLADRCLKYCGICCEECKCVPSGTYGNKHECPCYRDKKNSKGKSKCP 88          
BLAST of DY259917 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.701e-11
Identity = 29/60 (48.33%), Postives = 35/60 (58.33%), Query Frame = 1
Query:  217 ECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGGPKCP 396
            +C  +C  RCS +S  K CL  C  CC++C CVP GT GN   CPCY +  T  G  KCP
Sbjct:   40 DCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99          
BLAST of DY259917 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.465e-11
Identity = 28/60 (46.67%), Postives = 34/60 (56.67%), Query Frame = 1
Query:  217 ECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGGPKCP 396
            +C  +C  RCS +S    CL  C  CC +C CVP GT GN   CPCY +  T+ G  KCP
Sbjct:   40 DCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99          
The following BLAST results are available for this feature:
BLAST of DY259917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GAST1_SOLLC1.170e-3670.21Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=... [more]
RSI1_SOLLC4.457e-2875.00Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=... [more]
GASA4_ARATH3.305e-2363.64Gibberellin-regulated protein 4 OS=Arabidopsis tha... [more]
SNAK1_SOLTU1.392e-1350.85Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1[more]
GASA2_ARATH1.701e-1148.33Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
GASA3_ARATH6.465e-1146.67Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP10YJ21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259917 ID=DY259917; Name=DY259917; organism=Citrus clementina; type=EST; length=820bp
CATCACTCAAATCCTTTTCAAGCTCTTATTGTTGTGTTGTTTCTTCTCCA
AAGAATAATGGCCAGAATGCTGAGACTTGTTGTGTTATTTGTGGCATTGA
TGCTTGTTTTAGTGGCACAAAACCAGGCTGCGGGCACAGGAATTGCAGCG
TCTCAGCTACAGGCACAAGGCAACCGCCCTGCGCGCGGTACCACCCAAGG
GAGCCTTAATCATCAAGAATGTGCTCCAAAATGCCATTATAGATGCTCAG
CAACTTCATACAAGAAGCCGTGCCTGTTTTTCTGCCAAAAATGTTGTGCA
AAGTGCTTATGTGTGCCGGCAGGCACATATGGGAACAAGCAAACGTGCCC
TTGCTACAATAACTGGAAGACAAAGCGAGGAGGACCAAAATGCCCTTGAA
TTAATGGTATCAGTTTATAGTAATAAAATTTTCTATCGACACTAATCAGT
TATATATTTCCTATAATGCTTATTTTGCTATTGTAGCCAATCTTTCTTGT
ACTCGTTTAGCAAGCATAAGTAATGTATTTTTCAATAAATTATAGAATAT
AATCTGGGTCTAATTATTCCAATCAAAATATTAAAAAAAAACCAAATATC
ACTACTTTCAATCACTATATCCCCCCTTTTTTCGAAAAAATTGGGCTTTA
AAAAAAATCATTTCTTAAACATTTTTTGCACCTAACAAGGCCCACATCAT
TCAAAAAAAAATATCTTTTTCTCTCCCCCCCAAAATACCCCCACCTGAAG
CCACTAACCAGTCATTACATGTTCATCAAACCCACGGCCCCCCGTCACAC
AAACAAGGTGTTATACTTAG
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