DY260050
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY260050 vs. ExPASy Swiss-Prot
Match: NHP2_ARATH (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Arabidopsis thaliana GN=At5g08180 PE=1 SV=1) HSP 1 Score: 226.868 bits (577), Expect = 1.638e-58 Identity = 111/154 (72.08%), Postives = 131/154 (85.06%), Query Frame = 3 Query: 69 GSDSEAH*TPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVAEDVKELASSL 530 GSD+EA + K++KK ++LAPIAKPLAGKKL KRT KL+++AA KCLKRGVKEVVKSIRRG KGLCVIAGNISPIDVITH+PILCEE+ +PY+YV SKEDLA AGATKRPTCCVLV+ KP KG+L EE KLK DY V++D+KELA+S+ Sbjct: 2 GSDTEAEKSIQKEKKKYAITLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKELATSV 155
BLAST of DY260050 vs. ExPASy Swiss-Prot
Match: NHP2_YEAST (H/ACA ribonucleoprotein complex subunit 2 OS=Saccharomyces cerevisiae GN=NHP2 PE=1 SV=2) HSP 1 Score: 144.05 bits (362), Expect = 1.396e-33 Identity = 71/161 (44.10%), Postives = 112/161 (69.57%), Query Frame = 3 Query: 36 EQXTENRKKKTGSDSEAH*TPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVAEDVKEL 518 ++ E+++ KT + EA ++ ++ P AKPLA KKL+K+ LK V++A++ K +KRGVKEVVK++R+G KGL VIAG+ISP DVI+H+P+LCE+ +PYI++ SK+DL AGATKRPT V ++ K + G+ ++++ K + V ++V+ L Sbjct: 6 KEHKESKESKTVDNYEA----------RMPAVLPFAKPLASKKLNKKVLKTVKKASKAKNVKRGVKEVVKALRKGEKGLVVIAGDISPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGATKRPTSVVFIVPGSNKKKDGKNKEEEYKESFNEVVKEVQAL 156
BLAST of DY260050 vs. ExPASy Swiss-Prot
Match: NHP2_SCHPO (H/ACA ribonucleoprotein complex subunit 2 OS=Schizosaccharomyces pombe GN=nhp2 PE=1 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 1.106e-30 Identity = 63/131 (48.09%), Postives = 97/131 (74.05%), Query Frame = 3 Query: 126 SLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVAEDVKEL 518 +L PIAKPLA KKL+K+ +K V++A++ K + RGVKEVVK++R+G KGL ++AG+ISP+DVI+H+P+LCE++++PY+Y SKE L A TKRPT CV+++ K ++ + E+ K Y + ++V L Sbjct: 24 ALMPIAKPLAPKKLNKKMMKTVKKASKQKHILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSCVMIVPGGKKKDMSKVEE--YKESYEEIIKEVPAL 152
BLAST of DY260050 vs. ExPASy Swiss-Prot
Match: NHP2_XENTR (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Xenopus tropicalis GN=nhp2 PE=2 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 4.350e-27 Identity = 59/123 (47.97%), Postives = 81/123 (65.85%), Query Frame = 3 Query: 57 KKKTGSDSEAH*TPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLV 425 K K E TP K + + L PIAKPLAG+KL+K+ K V++A + K ++RGVKEV K I +G KG+ V+AG+ PI+V H+P++CE+ IPY YV SK DL A +KRPTC +L+ Sbjct: 3 KAKKEESEEVPETPSKSYDELLAYLNPIAKPLAGRKLTKKLYKCVKKAIKQKNIRRGVKEVQKFINKGEKGIVVMAGDTLPIEVYCHIPVMCEDRGIPYSYVPSKSDLGAAAGSKRPTCVILI 125
BLAST of DY260050 vs. ExPASy Swiss-Prot
Match: NHP2_XENLA (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Xenopus laevis GN=nhp2 PE=2 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 2.820e-26 Identity = 58/123 (47.15%), Postives = 81/123 (65.85%), Query Frame = 3 Query: 57 KKKTGSDSEAH*TPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLV 425 K K E TP K + + L P+AKPLAG+KL+K+ K V++A + K ++RGVKEV K I +G KG+ V+AG+ PI+V H+P++CE+ IPY YV SK DL A +KRPTC +L+ Sbjct: 3 KVKKEECEEVPETPSKSYDELLSYLNPVAKPLAGRKLTKKLYKCVKKAIKQKNIRRGVKEVQKFINKGEKGIVVMAGDTLPIEVYCHIPVMCEDRGIPYSYVPSKSDLGAAAGSKRPTCVILI 125
BLAST of DY260050 vs. ExPASy Swiss-Prot
Match: NHP2_DANRE (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Danio rerio GN=nhp2 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 2.387e-25 Identity = 64/158 (40.51%), Postives = 94/158 (59.49%), Query Frame = 3 Query: 45 TENRKKKTGSDSEAH*TPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVAEDVKEL 518 T+ +K+K G + K ++ I ++ PIA PLA +KLSK+ K V++AA+ K ++RGVKEV K I +G G+ V AG+ PIDV H+PI+CE+ +PY YV SK DL ++ +KRPTC +++ KP D+ K Y E+V L Sbjct: 2 TKVKKEKAGEEETGG--TEKSYQELIANINPIANPLASRKLSKKLYKCVKKAAKVKQIRRGVKEVQKFINKGETGIVVFAGDTLPIDVYCHLPIMCEDRSLPYAYVPSKVDLGSSAGSKRPTCVIMI--KP---------HDEYKEAYDECVEEVTSL 146
BLAST of DY260050 vs. ExPASy Swiss-Prot
Match: NHP2_CAEEL (Putative H/ACA ribonucleoprotein complex subunit 2-like protein OS=Caenorhabditis elegans GN=Y48A6B.3 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 2.387e-25 Identity = 59/137 (43.07%), Postives = 91/137 (66.42%), Query Frame = 3 Query: 36 EQXTENRKKKTGSDSEAH*TPHKDEKKKIVSLA-PIAKPLAGKKLSKRTLKLVRRA-AEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPT 440 E E+ + D+ A T KDE + + L PIA+PLA +KL+K+ KL+++A A K L+ G+K+V K +RR KG+C++AGN+SPIDV +H+P +CEE +IPY+Y+ S+E L A +RP+ +L+ KP+ Sbjct: 8 ETMNESTVSEANGDATAP-TTEKDEYQALCELVNPIAQPLANRKLAKKVYKLIKKASAGDKTLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAVGHRRPS--ILIFVKPS 141
BLAST of DY260050 vs. ExPASy Swiss-Prot
Match: NHP2_CAEBR (Putative H/ACA ribonucleoprotein complex subunit 2-like protein OS=Caenorhabditis briggsae GN=CBG18231 PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 3.118e-25 Identity = 54/118 (45.76%), Postives = 84/118 (71.19%), Query Frame = 3 Query: 93 TPHKDEKKKIVSLA-PIAKPLAGKKLSKRTLKLVRRAAE-HKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPT 440 T KDE + + L PIA+PLA +KL+K+ KL+++AA K L+ G+K+V K +R+ KG+C++AGN+SPIDV +H+P +CEE +IPY+Y+ S+E L A +RP+ +L+ KP+ Sbjct: 26 TTEKDEYQALCELVNPIAQPLANRKLAKKVYKLIKKAAAGEKTLREGIKDVQKELRKNEKGICILAGNVSPIDVYSHIPAICEEKEIPYVYIPSREQLGLAVGHRRPS--ILIFVKPS 141
BLAST of DY260050 vs. ExPASy Swiss-Prot
Match: NHP2_BRABE (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Branchiostoma belcheri PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 4.072e-25 Identity = 62/167 (37.13%), Postives = 104/167 (62.28%), Query Frame = 3 Query: 24 TPRXEQXTENRK-KKTGSDSEAH*TPHKDEKKKIVSLA----PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVAEDV 509 TP+ ++ E + +++G + E D ++ LA PIA PLA +KL+KR K V++A++ K +++G+++V K I++G +G+ +IAG+ +PI+V H+P++CE++ IPY YV +K+DL A +KRPTCCVL+ KP E Q D+ D T + + Sbjct: 4 TPKKDKTEEKEEHEESGGNKE-------DRERAYEVLATRVNPIASPLAARKLTKRLYKTVKKASKEKNIRKGIRDVQKFIKKGERGIVLIAGDTTPIEVYCHLPVVCEDAKIPYCYVPAKQDLGEAAGSKRPTCCVLL--KP--NESYQSSYDECLTDVTTLPRPI 159
BLAST of DY260050 vs. ExPASy Swiss-Prot
Match: NHP2_MOUSE (H/ACA ribonucleoprotein complex subunit 2 OS=Mus musculus GN=Nhp2 PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 6.945e-25 Identity = 55/121 (45.45%), Postives = 86/121 (71.07%), Query Frame = 3 Query: 111 KKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDK 473 K+ +V+L PIA+PLA ++L+++ K +++A + K ++RGVKEV K + +G KG+ V+AG+ PI+V H+P+LCE+ ++PY+Y+ SK DL A +KRPTC ++V KP E QE DK Sbjct: 25 KELLVNLNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVLCEDQNLPYVYIPSKTDLGAATGSKRPTCVIMV--KP--HEEYQETYDK 141 The following BLAST results are available for this feature:
BLAST of DY260050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260050 ID=DY260050; Name=DY260050; organism=Citrus clementina; type=EST; length=1080bpback to top |