DY260059

Overview
NameDY260059
Unique NameDY260059
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1083
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260059 vs. ExPASy Swiss-Prot
Match: XRN4_ARATH (5'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN=XRN4 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 4.345e-60
Identity = 121/218 (55.50%), Postives = 144/218 (66.06%), Query Frame = 2
Query:   86 QIILYYQXXXXXXXXDRFAWEIDVNTSGGMNGYIWLCERNGFRSIIPSPVKGLPDIERNPAINVTYLNPQKHRHIPEPPKGATIPAKTLKPIDIKPFPTLWHEDNS-RRQQGRERPQVPGAIAGPVLGEAAHRLIKNTLNYKPN-GSPGFFEQPS--YRNFPGNYA-NAVTRLRPAAPSGHERGYGDESRYNYGNY-NYPQGMRGNS-RFPVPSNGMQ 718
            +I+ YY         +   W ID N+S GMNG++W  ERNGF++ + SPV GLP IE+N A+NVTYL P KH HI EPP+GA IP K L  +DIKPFP LWHEDNS RR+Q R+RPQV GAIAGP LGEAAHRLIKNTLN K + G+      P+  YRN PGNY+   V R R   PS + + Y D+S Y YG Y N  QG   N  R+P PSNG Q
Sbjct:  624 RILQYYHFYQHMPPHECLPWMIDPNSSQGMNGFLWFSERNGFQTRVDSPVNGLPCIEQNRALNVTYLCPAKHSHISEPPRGAIIPDKILTSVDIKPFPPLWHEDNSNRRRQARDRPQVVGAIAGPSLGEAAHRLIKNTLNMKSSTGAASGLIDPNGYYRNVPGNYSYGGVNRPRAPGPSPYRKAYDDDSSYYYGKYNNSTQGTFNNGPRYPYPSNGSQ 841          

HSP 2 Score: 28.1054 bits (61), Expect = 4.345e-60
Identity = 14/37 (37.84%), Postives = 20/37 (54.05%), Query Frame = 3
Query:  765 LGTGMSALAIEESPRTPPPYVMLSRVPNSGYPGNPSP 875
            LG GMS L+IE++ R+   Y   +   N+     PSP
Sbjct:  861 LGAGMSGLSIEDNGRSKQLYSSYTEAANANLNPLPSP 897          
BLAST of DY260059 vs. ExPASy Swiss-Prot
Match: XRN3_ARATH (5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.113e-22
Identity = 79/225 (35.11%), Postives = 100/225 (44.44%), Query Frame = 2
Query:  137 FAWEIDVNTSGGMNGYIWLCERNGFRSIIPSPVKGLPDIERNPAINVTYLNPQKHRHIPEPPKGATIPAKTLKPIDIKPFPTLWHEDNSRR----------------QQGRERPQVPGAIAGPVLGEAAHRLIKNTLNYKPN--GSPGFFEQPSYRNFPGNYANAVTRLRPA--APSGHERGYGDESRY-NYGNYNYPQGMRGNSRF---PVPSNGMQGNHPPLG 739
            F  +I    S GMNGY+  C       +  SP++G+ DI  N  I   Y  P  H HI  PP G   P KT+   D+KP P LWHEDN RR                 QGR+ P  PG+++G  LG AAHRL+ N+L    +   +P     P Y   P  Y   +        AP G  +GY   + Y N G Y  P+G  G  RF   P  S   +G H   G
Sbjct:  737 FKVKIKPKLSDGMNGYLTPCSGETHPPVFRSPMEGMEDILTNQVICCIYRLPDAHEHITRPPPGVIFPKKTVDIGDLKPPPALWHEDNGRRPMHNNHGMHNNHGMHNNQGRQNP--PGSVSGRHLGNAAHRLVSNSLQMGTDRYQTPTDVPAPGYGYNPPQYVPPIPYQHGGYMAPPG-AQGYAQPAPYQNRGGYQ-PRGPSG--RFPSEPYQSQSREGQHASRG 955          
BLAST of DY260059 vs. ExPASy Swiss-Prot
Match: XRN2_ARATH (5'-3' exoribonuclease 2 OS=Arabidopsis thaliana GN=XRN2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 5.184e-12
Identity = 46/130 (35.38%), Postives = 66/130 (50.77%), Query Frame = 2
Query:  146 EIDVNTSGGMNGYIWLCERNGFRSIIPSPVKGLPDIERNPAINVTYLNPQKHR--HIPEPPKGATIPAKTLKPIDIKPFPTLWHEDNSRRQQGR-----ERPQVPGAIAGPVLGEAAHRLIKNTLNYKPN 514
            +ID   S GMNGYI  C  +   S   S V+G+ D+  N  I   Y  P+  R   I        IP KT+  +D+K    LWHED  +R+        +R    G+I+G  LG+A+HRL+  T+N +P+
Sbjct:  732 KIDPGLSDGMNGYIASCGGDSQPSCFCSTVEGMEDVLTNQVICAIYKLPEDIRGSEITHQIPRLAIPKKTISLVDLKSGGLLWHEDGDKRRAPPKVIKIKRYNPEGSISGGRLGKASHRLVLQTINAQPD 861          
The following BLAST results are available for this feature:
BLAST of DY260059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
XRN4_ARATH4.345e-6055.505'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN... [more]
XRN3_ARATH1.113e-2235.115'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN... [more]
XRN2_ARATH5.184e-1235.385'-3' exoribonuclease 2 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YC03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260059 ID=DY260059; Name=DY260059; organism=Citrus clementina; type=EST; length=1083bp
GTTGCCTTGCTTTGATTTATTGGGAATTTCCACCGTTCAAAAAGTTTTGG
GCCATGATTTTGGCAGGAAGCCTGCTTTGTATCCACAGATTATTTTGTAC
TACCAGCTCCACCATCCGTTGCCCCCTCCAGACAGATTCGCTTGGGAAAT
TGATGTAAATACCAGTGGGGGAATGAATGGATACATTTGGTTATGTGAGA
GAAATGGTTTCAGAAGCATCATCCCTTCACCTGTCAAGGGGCTGCCAGAC
ATTGAGCGTAACCCAGCCATAAATGTTACGTATCTTAACCCTCAAAAACA
TAGACACATCCCAGAACCTCCCAAGGGCGCAACCATACCTGCTAAGACCC
TAAAACCAATAGACATTAAACCATTTCCTACTCTTTGGCATGAAGACAAT
AGTCGGCGCCAGCAAGGCAGGGAGAGGCCACAAGTGCCTGGAGCCATAGC
TGGCCCTGTATTGGGAGAAGCAGCACATCGTCTTATCAAGAATACACTTA
ATTATAAACCTAATGGTTCTCCTGGATTCTTCGAGCAACCATCATATCGC
AATTTCCCAGGCAACTATGCAAATGCAGTCACCAGACTGAGACCCGCTGC
ACCTTCTGGGCATGAAAGGGGCTATGGTGATGAATCCAGATATAATTATG
GAAATTACAATTATCCTCAAGGCATGAGAGGTAACTCCAGATTTCCAGTC
CCATCAAATGGTATGCAAGGAAACCACCCCCCGCTAGGATGCAGGAGAGA
TTCCAACCCAGGACTTGGGGACTGGGATGTCCGCCTTGGCAATTGAAGAA
AGCCCCAGAACCCCGCCCCCCTATGTGATGTTATCCCGGGTGCCAAACTC
CGGATACCCCGGGAACCCCAGCCCCGCCATTTCCCGCCCGACATGGGGCC
CCCCTCCCCCCCCCCCCCAAAAACGGGACCCACAAAACCTAACCCGGGAA
AACCCGCCAGGTTAAAATGGGAACCAAAAGTGCCTCCGGGGGGAACCTTA
AAAAAACCCCCCGGGGAAAAAAGGTTTATCCAAATTAAAAACCCCCACCG
CCCCTAAGAAAACCTCCCAAACCCCTTGAAACC
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