DY260059
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY260059 vs. ExPASy Swiss-Prot
Match: XRN4_ARATH (5'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN=XRN4 PE=2 SV=1) HSP 1 Score: 225.713 bits (574), Expect = 4.345e-60 Identity = 121/218 (55.50%), Postives = 144/218 (66.06%), Query Frame = 2 Query: 86 QIILYYQXXXXXXXXDRFAWEIDVNTSGGMNGYIWLCERNGFRSIIPSPVKGLPDIERNPAINVTYLNPQKHRHIPEPPKGATIPAKTLKPIDIKPFPTLWHEDNS-RRQQGRERPQVPGAIAGPVLGEAAHRLIKNTLNYKPN-GSPGFFEQPS--YRNFPGNYA-NAVTRLRPAAPSGHERGYGDESRYNYGNY-NYPQGMRGNS-RFPVPSNGMQ 718 +I+ YY + W ID N+S GMNG++W ERNGF++ + SPV GLP IE+N A+NVTYL P KH HI EPP+GA IP K L +DIKPFP LWHEDNS RR+Q R+RPQV GAIAGP LGEAAHRLIKNTLN K + G+ P+ YRN PGNY+ V R R PS + + Y D+S Y YG Y N QG N R+P PSNG Q Sbjct: 624 RILQYYHFYQHMPPHECLPWMIDPNSSQGMNGFLWFSERNGFQTRVDSPVNGLPCIEQNRALNVTYLCPAKHSHISEPPRGAIIPDKILTSVDIKPFPPLWHEDNSNRRRQARDRPQVVGAIAGPSLGEAAHRLIKNTLNMKSSTGAASGLIDPNGYYRNVPGNYSYGGVNRPRAPGPSPYRKAYDDDSSYYYGKYNNSTQGTFNNGPRYPYPSNGSQ 841 HSP 2 Score: 28.1054 bits (61), Expect = 4.345e-60 Identity = 14/37 (37.84%), Postives = 20/37 (54.05%), Query Frame = 3 Query: 765 LGTGMSALAIEESPRTPPPYVMLSRVPNSGYPGNPSP 875 LG GMS L+IE++ R+ Y + N+ PSP Sbjct: 861 LGAGMSGLSIEDNGRSKQLYSSYTEAANANLNPLPSP 897
BLAST of DY260059 vs. ExPASy Swiss-Prot
Match: XRN3_ARATH (5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 PE=2 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 1.113e-22 Identity = 79/225 (35.11%), Postives = 100/225 (44.44%), Query Frame = 2 Query: 137 FAWEIDVNTSGGMNGYIWLCERNGFRSIIPSPVKGLPDIERNPAINVTYLNPQKHRHIPEPPKGATIPAKTLKPIDIKPFPTLWHEDNSRR----------------QQGRERPQVPGAIAGPVLGEAAHRLIKNTLNYKPN--GSPGFFEQPSYRNFPGNYANAVTRLRPA--APSGHERGYGDESRY-NYGNYNYPQGMRGNSRF---PVPSNGMQGNHPPLG 739 F +I S GMNGY+ C + SP++G+ DI N I Y P H HI PP G P KT+ D+KP P LWHEDN RR QGR+ P PG+++G LG AAHRL+ N+L + +P P Y P Y + AP G +GY + Y N G Y P+G G RF P S +G H G Sbjct: 737 FKVKIKPKLSDGMNGYLTPCSGETHPPVFRSPMEGMEDILTNQVICCIYRLPDAHEHITRPPPGVIFPKKTVDIGDLKPPPALWHEDNGRRPMHNNHGMHNNHGMHNNQGRQNP--PGSVSGRHLGNAAHRLVSNSLQMGTDRYQTPTDVPAPGYGYNPPQYVPPIPYQHGGYMAPPG-AQGYAQPAPYQNRGGYQ-PRGPSG--RFPSEPYQSQSREGQHASRG 955
BLAST of DY260059 vs. ExPASy Swiss-Prot
Match: XRN2_ARATH (5'-3' exoribonuclease 2 OS=Arabidopsis thaliana GN=XRN2 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 5.184e-12 Identity = 46/130 (35.38%), Postives = 66/130 (50.77%), Query Frame = 2 Query: 146 EIDVNTSGGMNGYIWLCERNGFRSIIPSPVKGLPDIERNPAINVTYLNPQKHR--HIPEPPKGATIPAKTLKPIDIKPFPTLWHEDNSRRQQGR-----ERPQVPGAIAGPVLGEAAHRLIKNTLNYKPN 514 +ID S GMNGYI C + S S V+G+ D+ N I Y P+ R I IP KT+ +D+K LWHED +R+ +R G+I+G LG+A+HRL+ T+N +P+ Sbjct: 732 KIDPGLSDGMNGYIASCGGDSQPSCFCSTVEGMEDVLTNQVICAIYKLPEDIRGSEITHQIPRLAIPKKTISLVDLKSGGLLWHEDGDKRRAPPKVIKIKRYNPEGSISGGRLGKASHRLVLQTINAQPD 861 The following BLAST results are available for this feature:
BLAST of DY260059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 3
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DY260059 ID=DY260059; Name=DY260059; organism=Citrus clementina; type=EST; length=1083bpback to top |