DY260226

Overview
NameDY260226
Unique NameDY260226
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1079
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 5.387e-53
Identity = 84/151 (55.63%), Postives = 104/151 (68.87%), Query Frame = 2
Query:  134 GHGTDGGELGKILSREMFEDLLPYRNDVRCPARG-FYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDL 577
            G G  GG++G ++S  MF+ +L +RND  C  +  FY Y+AFI AA++F  FG +G+ T RKREIAAFFAQT  ETTGGWP AP G YAWGYC++R+   P  DYC      PC    +Y GRGPIQ++ N NY  CG A+GVDLLNNPDL
Sbjct:   70 GPGPSGGDIGSVISNSMFDQMLKHRNDNACQGKNNFYSYNAFINAARSFGGFGTTGDTTARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSP-GDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDL 219          

HSP 2 Score: 54.299 bits (129), Expect = 5.387e-53
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 1
Query:  592 PVPIFQSAIWFWMTAPAPKPSCHQVLTDEWKPS 690
            PV  F+SAIWFWMT  +PKPSCH V+   W+PS
Sbjct:  224 PVISFKSAIWFWMTPQSPKPSCHDVIIGRWQPS 256          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 7.626e-48
Identity = 111/248 (44.76%), Postives = 142/248 (57.26%), Query Frame = 2
Query:  164 KILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCY---RYCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDLPCXXXXXXXXXXXXXXXXXXXXXXXXATKSLPTNGNHPPLK*TPA-RLPGYGPTTNITHRGIQLRPRWE*TPYPTV---LGSFPPFGGRLGFRPADILVATNQRP*G 886
            KI+SR MF+ +L +RN+  CPA+GFY YDAF+ AAK+FP+FG +G+  +RKRE+AAF  QT  ETTGGWP AP G YAWGYC++++   P+S+YC    RY PC     Y+GRGP+QL+WN NY  CGEAL V+LL NPDL                          +   + T    P    T A RLPGYG  TN+ + G++        P P V   LG F  + G LG    + L   NQRP G
Sbjct:    4 KIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKE-RNPSSNYCAPSPRY-PCAPGKSYYGRGPLQLSWNYNYGPCGEALRVNLLGNPDL--VATDRVLSFKTALWFWMTPQAPKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGK----GPNPQVADRLGFFRRYCGLLGVGTGNNLDCYNQRPFG 243          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 1.301e-47
Identity = 109/265 (41.13%), Postives = 141/265 (53.21%), Query Frame = 2
Query:  101 GSRVVCGERDTGHGTDGGELGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYC--PCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDL----PCXXXXXXXXXXXXXXXXXXXXXXXXATKSLPTNGNHPPLK*TPARLPGYGPTTNITHRGIQLRPRWE*TPYPTVLGSFPPFGGRLGFRPADILVATNQR 877
            G +  CG    G     G+L  I+SR  F+D+L +RND  CPARGFY YDAFI AAK+FP FG +G+   RK+EIAAFF QT  ETTGGW  AP G Y+WGYC+ +Q   P+S+YC      PC     Y+GRGP+QL+WN NY +CG A+G DLLNNPDL    P                           +  P++ +         R+PGYG  TNI + G++   R +       +G +  +   LG  P   L   NQR
Sbjct:   55 GCQSQCGGTPPG---PTGDLSGIISRSQFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCF-KQEQNPSSNYCSPSAEWPCASGKSYYGRGPMQLSWNYNYGQCGRAIGSDLLNNPDLVSNDPVIAFKAAIWFWMTPQSPKPSCHAVIVGQWQPSDADR-----AAGRVPGYGVITNIINGGLEC-GRGQDARVADRIGFYQRYCNILGVNPGGNLDCYNQR 309          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.699e-47
Identity = 113/277 (40.79%), Postives = 149/277 (53.79%), Query Frame = 2
Query:   98 CGSRV-VCGERDTGHGTDGGELGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCY--RYCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDLPCXXXXXXXXXXXXXXXXXXXXXXXXATKSLPTNGNHPP-LK*TPARLPGYGPTTNITHRGIQLRPRWE*TPYPTVLGSFPPFGGRLGF--RPADILVAT--------NQRP*G 886
            CG+    CG       +  G++G++++R MF D+L +RN+  CP +GFY YDAFI AAKAFP FG +G+ T RKREIAAF AQT  ETTGGW  AP G YAWGYCY+R+   P + YC      PC    +Y+GRGPIQ+++N NY + G+A+GVDL+NNPDL                          +  ++ T G  P     +  RLPG+G  TNI + G++              G  P    R+GF  R  DIL  +        NQRP G
Sbjct:   44 CGNTADYCGSGCQSQCSSTGDIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGA-YCVPSAQWPCAAGRKYYGRGPIQISYNYNYGQAGKAIGVDLVNNPDL--VATDAVISFKTAFWFWMTPQSPKPSCHNVITGGWTPSGADRSAGRLPGFGVITNIINGGVECGK-----------GVVPQVQDRIGFYKRYCDILRVSYGNNLDCNNQRPFG 306          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.068e-47
Identity = 80/148 (54.05%), Postives = 99/148 (66.89%), Query Frame = 2
Query:  140 GTDGGELGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDL 577
            GT  G +  I+SR  F+ +L +RND  C A+GFY YDAF+ AA AFP FG +G+   +KRE+AAF AQT  ETTGGW  AP G +AWGYC+ +Q    +SDYC      PC    +Y+GRGPIQL+ N NY   G A+GVDLL NPDL
Sbjct:   19 GTARGSVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCF-KQERGASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLANPDL 165          

HSP 2 Score: 48.521 bits (114), Expect = 3.068e-47
Identity = 18/29 (62.07%), Postives = 22/29 (75.86%), Query Frame = 1
Query:  604 FQSAIWFWMTAPAPKPSCHQVLTDEWKPS 690
            F++AIWFWMTA  PKPS H V+  +W PS
Sbjct:  174 FKTAIWFWMTAQPPKPSSHAVIAGQWSPS 202          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 188.348 bits (477), Expect = 6.456e-47
Identity = 105/248 (42.34%), Postives = 135/248 (54.44%), Query Frame = 2
Query:  152 GELGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYC--PCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDL----PCXXXXXXXXXXXXXXXXXXXXXXXXATKSLPTNGNHPPLK*TPARLPGYGPTTNITHRGIQLRPRWE*TPYPTVLGSFPPFGGRLGFRPADILVATNQR 877
            G+L  I+S   F+D+L +RND  CPARGFY Y+AFI AAK+FP FG +G+   RK+E+AAFF QT  ETTGGW  AP G Y+WGYC+ +Q   PASDYC      PC    +Y+GRGP+QL+WN NY  CG A+GVDLLNNPDL                              A +  P++ +         RLPGYG  TNI + G++   R +       +G +  +    G  P   L   NQR
Sbjct:   84 GDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCF-KQEQNPASDYCEPSATWPCASGKRYYGRGPMQLSWNYNYGLCGRAIGVDLLNNPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADR-----AAGRLPGYGVITNIINGGLEC-GRGQDGRVADRIGFYQRYCNIFGVNPGGNLDCYNQR 324          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 6.456e-47
Identity = 113/270 (41.85%), Postives = 143/270 (52.96%), Query Frame = 2
Query:   95 NCGSRVVCGERDTGHGTDGGELGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDL----PCXXXXXXXXXXXXXXXXXXXXXXXXATKSLPTNGNHPPLK*TPARLPGYGPTTNITHRGIQLRPRWE*TPYPTVLGSFPPFGGRLGFRPADILVATNQRP*G 886
            NC S+   G    G    GG+LG I+S  MF+ +L +RND  C  +GFY Y+AFI AA++FP FG SG+ T RKREIAAFFAQT  ETTGGW  AP G YAWGYC++R+   P  DYC      PC    +Y GRGPIQ++ N NY  CG A+GVDLLNNPDL    P                           +  P++ +         RLPG+G  TNI + G++   R   +     +G +  +   LG  P D L   NQR  G
Sbjct:   58 NCQSQCPGGPTPPG----GGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSP-GDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSSADR-----AANRLPGFGVITNIINGGLEC-GRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFG 316          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 1.101e-46
Identity = 109/252 (43.25%), Postives = 137/252 (54.37%), Query Frame = 2
Query:  149 GGELGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDL----PCXXXXXXXXXXXXXXXXXXXXXXXXATKSLPTNGNHPPLK*TPARLPGYGPTTNITHRGIQLRPRWE*TPYPTVLGSFPPFGGRLGFRPADILVATNQRP*G 886
            GG+LG I+S  MF+ +L +RND  C  +GFY Y+AFI AA++FP FG SG+ T RKREIAAFFAQT  ETTGGW  AP G YAWGYC++R+   P  DYC      PC    +Y GRGPIQ++ N NY  CG A+GVDLLNNPDL    P                           +  P+ G+         RLPG+G  TNI + G++   R   +     +G +  +   LG  P D L   NQR  G
Sbjct:   77 GGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSP-GDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSAGDR-----AANRLPGFGVITNIINGGLEC-GRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFG 321          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 2.453e-46
Identity = 110/265 (41.51%), Postives = 144/265 (54.34%), Query Frame = 2
Query:  155 ELGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYR--YCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDLPCXXXXXXXXXXXXXXXXXXXXXXXXATKSLPTNGNHPPL--K*TPA-------RLPGYGPTTNITHRGIQLRPRWE*TPYPTVLGSFPPFGGRLGFRPADILVATNQRP*GPNSIDPPYVT 916
            +L  ++SR  F+ +L +RND  CPA+GFY YDAFI AAKA+P+FGN+G+   RKREIAAF  QT  ETTGGW  AP G YAWGYC++R+  R  S YC      PC    QY+GRGPIQ++WN NY +CG A+GVDLLN PDL                           T   P   +H  +  + TP+       RLPGYG  TNI + G++   R + +     +G F  +   LG    + L   +Q P G + +    VT
Sbjct:   75 DLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRE--RNPSTYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDL----------VATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLEC-GRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLLLSDLVT 326          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 5.465e-46
Identity = 99/214 (46.26%), Postives = 125/214 (58.41%), Query Frame = 2
Query:  155 ELGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYR--YCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDLPCXXXXXXXXXXXXXXXXXXXXXXXXATKSLPTNGNHPPL--K*TPA-------RLPGYGPTTNITHRGIQ 763
            +L  ++SR  F+ +L +RND  CPA+GFY YDAFI AAKA+P+FGN+G+   RKREIAAF  QT  ETTGGW  AP G YAWGYC++R+  R  S YC      PC    QY+GRGPIQ++WN NY +CG A+GVDLLN PDL                           T   P   +H  +  + TP+       RLPGYG  TNI + G++
Sbjct:   74 DLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRE--RNPSAYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDL----------VATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLE 275          
The following BLAST results are available for this feature:
BLAST of DY260226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI4_SOLTU5.387e-5355.63Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHIT_CARPA7.626e-4844.76Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI2_BRANA1.301e-4741.13Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIB_VITVI1.699e-4740.79Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI2_HORVU3.068e-4754.0526 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHIB_ARATH6.456e-4742.34Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI2_TOBAC6.456e-4741.85Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI1_TOBAC1.101e-4643.25Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHIT_PHAVU2.453e-4641.51Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI5_PHAVU5.465e-4646.26Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YM09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260226 ID=DY260226; Name=DY260226; organism=Citrus clementina; type=EST; length=1079bp
TGATATCATAACCTTTGCTTTCCAAATGAGGCTCATTGGGTCCTTACTAA
TTTTCTCTCTAGTTTTATCTTTTGTACTAGGAGGTTCCGCCCAGAATTGT
GGAAGCCGCGTTGTGTGCGGTGAACGTGATACTGGCCACGGGACGGATGG
CGGTGAACTGGGCAAGATCCTCTCAAGGGAGATGTTTGAAGACTTGCTTC
CGTATAGAAATGATGTACGATGCCCTGCCAGAGGCTTCTACCCTTACGAT
GCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTAACTCTGGAAA
TGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTGGCG
ATGAAACTACTGGGGGATGGCCCGATGCACCTGGTGGAGAATATGCTTGG
GGATATTGCTATATTAGGCAAGTTAGCCGCCCTGCGTCCGACTACTGTTA
TCGTTACTGTCCATGTCCTTTGCCAGGGCAATACCATGGCCGAGGTCCCA
TTCAACTCACTTGGAATTGCAATTACCTAAGGTGCGGAGAAGCCTTGGGG
GTGGACCTGTTGAACAACCCAGACCTTCCCTGCCACTGATCCCAGTACCT
ATCTTCCAGTCAGCCATCTGGTTCTGGATGACTGCCCCAGCACCAAAGCC
CTCCTGCCACCAAGTCCTTACCGACGAATGGAAACCATCCCCCCTTGAAG
TAAACCCCCGCCCGCCTTCCCGGATACGGTCCCACCACCAATATTACCCA
CCGTGGAATTCAATTGCGGCCCAGGTGGGAATGAACGCCGTACCCCACCG
TATTGGGCTCCTTTCCCCCTTTCGGGGGCCGTTTGGGATTCCGCCCGGCG
GACATCCTTGTTGCCACCAACCAACGCCCTTAGGGCCCTAACTCGATCGA
CCCACCCTACGTGACCCCCCTGGATCCACGCTTCATTCACAACCCCCTCC
ACAAAAACCTCCTCTCAACAAACCTTTTCACTGCCTCCCCTCTGAGGGGG
CAACAACCCACTTTTTTCCCCTCCCCCACCCCCCCAATTCTCCCCAAACC
ACATCTAAAACCGACCCCCCCCTTGCCAT
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