DY260337
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY260337 vs. ExPASy Swiss-Prot
Match: BRE1B_ARATH (E3 ubiquitin-protein ligase BRE1-like 2 OS=Arabidopsis thaliana GN=HUB2 PE=1 SV=2) HSP 1 Score: 314.694 bits (805), Expect = 5.898e-85 Identity = 161/250 (64.40%), Postives = 201/250 (80.40%), Query Frame = 2 Query: 5 IEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSALTSSDKEYEPIPRKTEDM 754 IEKL K+KL+ Q + + +E D R L EIK+S+R+A +QAE LKN LDEH LELRVKAA+E E+ACQ+RL+ A+AEI EL +LD SER+V+EL+E +K K++EAEA IAEMETIGQA+EDMQTQNQHLLQQVAERDD NIKLVSESVKTK + LSEKQ + +QL Q+NA VE+ K RI H EEQMK C +EA + EDRHL ++LETTKWE+ADA+KE +WLKSA++SS+KEYE I R+T+D+ Sbjct: 546 IEKLLKEKLQLQNLASICTRECNDDRGLAEIKDSQRKAQAQAEELKNVLDEHFLELRVKAAHETESACQERLATAKAEIAELRTQLDLSEREVLELKEGIKVKEQEAEASIAEMETIGQAYEDMQTQNQHLLQQVAERDDYNIKLVSESVKTKHAYNTHLSEKQVMEKQLHQVNASVENFKARIAHNEEQMKGCFSEAYKLIQEDRHLVISLETTKWEVADADKEFRWLKSAVSSSEKEYEQISRRTDDI 795
BLAST of DY260337 vs. ExPASy Swiss-Prot
Match: BRE1B_ORYSJ (E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp. japonica GN=BRE1B PE=2 SV=1) HSP 1 Score: 288.5 bits (737), Expect = 3.425e-78 Identity = 147/250 (58.80%), Postives = 197/250 (78.80%), Query Frame = 2 Query: 5 IEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSALTSSDKEYEPIPRKTEDM 754 IE L ++K E Q ++DM G+E + R + EI+ESE RA QAE L+ L+EH+LELRVKAANEAE ACQQRLS AEAE+ +L AK+DASERDVM+L+E+++ K+ E + +I+E+ETIGQA+EDMQTQNQHLLQQVA+RDD NIKLVS+SVK KQ LL+EK L +QLQ +N+ +ES+KL+I EEQMK + +A++ +SE+RHLA++LE T E++DAEKELKWL+SA S++KEYE +K ++ Sbjct: 490 IETLDQEKQELQFIVDMLGKECSESRAISEIEESENRARKQAEYLRKCLEEHNLELRVKAANEAETACQQRLSIAEAELEDLRAKVDASERDVMKLKESIRIKEAEVDGHISEIETIGQAYEDMQTQNQHLLQQVADRDDFNIKLVSDSVKMKQAYGSLLAEKNMLQKQLQHVNSSLESSKLKITSGEEQMKTYVAQAMKSSSENRHLAISLERTMLEVSDAEKELKWLRSATGSAEKEYEINQKKIAEL 739 HSP 2 Score: 26.1794 bits (56), Expect = 3.425e-78 Identity = 17/59 (28.81%), Postives = 23/59 (38.98%), Query Frame = 3 Query: 822 NKVPN*LSKLGEAPYQNFPAQKKNCNPFLRGGVGLTPPKRFLNQNAFPSSPPPVSQKNL 998 N+V S+ E Q + K C L+ GV PK + F P Q+NL Sbjct: 762 NEVSELTSETEETTIQKLQDEIKECKAILKCGVCFDRPKEVVITKCFHLFCSPCIQRNL 820
BLAST of DY260337 vs. ExPASy Swiss-Prot
Match: BRE1B_ORYSI (E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp. indica GN=BRE1B PE=3 SV=2) HSP 1 Score: 288.5 bits (737), Expect = 3.425e-78 Identity = 147/250 (58.80%), Postives = 197/250 (78.80%), Query Frame = 2 Query: 5 IEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSALTSSDKEYEPIPRKTEDM 754 IE L ++K E Q ++DM G+E + R + EI+ESE RA QAE L+ L+EH+LELRVKAANEAE ACQQRLS AEAE+ +L AK+DASERDVM+L+E+++ K+ E + +I+E+ETIGQA+EDMQTQNQHLLQQVA+RDD NIKLVS+SVK KQ LL+EK L +QLQ +N+ +ES+KL+I EEQMK + +A++ +SE+RHLA++LE T E++DAEKELKWL+SA S++KEYE +K ++ Sbjct: 490 IETLDQEKQELQFIVDMLGKECSESRAISEIEESENRARKQAEYLRKCLEEHNLELRVKAANEAETACQQRLSIAEAELEDLRAKVDASERDVMKLKESIRIKEAEVDGHISEIETIGQAYEDMQTQNQHLLQQVADRDDFNIKLVSDSVKMKQAYGSLLAEKNMLQKQLQHVNSSLESSKLKITSGEEQMKTYVAQAMKSSSENRHLAISLERTMLEVSDAEKELKWLRSATGSAEKEYEINQKKIAEL 739 HSP 2 Score: 26.1794 bits (56), Expect = 3.425e-78 Identity = 17/59 (28.81%), Postives = 23/59 (38.98%), Query Frame = 3 Query: 822 NKVPN*LSKLGEAPYQNFPAQKKNCNPFLRGGVGLTPPKRFLNQNAFPSSPPPVSQKNL 998 N+V S+ E Q + K C L+ GV PK + F P Q+NL Sbjct: 762 NEVSELTSETEETTIQKLQDEIKECKAILKCGVCFDRPKEVVITKCFHLFCSPCIQRNL 820
BLAST of DY260337 vs. ExPASy Swiss-Prot
Match: BRE1A_ARATH (E3 ubiquitin-protein ligase BRE1-like 1 OS=Arabidopsis thaliana GN=HUB1 PE=1 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 7.294e-43 Identity = 98/238 (41.18%), Postives = 144/238 (60.50%), Query Frame = 2 Query: 14 LQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSALTSSDKEYE 727 L+ E ++ LDMY +E D RD+ E KE E RA + + LK++LDE +LELRVKAANEAEA QQ L+AAEAEI +L K+D +RDV + + +KSK E Y++E++TIG A+ED+ QNQ LL QV ERDD NIKL E + ++Q+Q LL +K + + +QQ +A + E+Q++ C + + + +V+LE + + AD L+ +S L S + E Sbjct: 526 LKNSHEELKLFLDMYKRESTDARDIAEAKEQEYRAWAHVQSLKSSLDEQNLELRVKAANEAEAVSQQMLAAAEAEIADLRQKMDDCKRDVAKHSDILKSKHEEHGTYLSEIQTIGSAYEDIVPQNQQLLLQVTERDDYNIKLFLEGITSRQMQDTLLIDKYIMDKDIQQGSAYASFLSKKSSRIEDQLRFCTDQFQKLAEDKYQKSVSLENLQKKRADIGNGLEQARSRLEESHSKVE 763
BLAST of DY260337 vs. ExPASy Swiss-Prot
Match: BRE1A_ORYSJ (E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza sativa subsp. japonica GN=BRE1A PE=2 SV=3) HSP 1 Score: 171.014 bits (432), Expect = 1.053e-41 Identity = 97/233 (41.63%), Postives = 138/233 (59.23%), Query Frame = 2 Query: 5 IEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAL 703 I L++ E ++ DMY +E D R++ME ++ E + LK++LDE LE RVKAANEAEA QQRL+ AEAEI E KL S +D++ L +KSK E EAY E+E IGQA+ED+Q QNQ LLQQ+ ERDD N K+ E VK KQ Q L E +L R LQQ ++L++ +I+ E+Q+K + + +V+L + +L D ++ + L +L Sbjct: 529 ISDLKQTNKELKLFADMYKRESTDSREIMESRDREFLEWAHVHALKSSLDESKLEQRVKAANEAEAITQQRLATAEAEIAESGQKLGTSRKDLVSLSHMLKSKQEECEAYRVEVECIGQAYEDIQAQNQQLLQQIIERDDDNTKIFMEGVKAKQTQDALHLETYSLRRNLQQESSLMDLYNQKIVSLEDQLKMWSDRVGKLQEDGWQQSVSLSNYQRKLVDVHRDAQKLMQSL 761
BLAST of DY260337 vs. ExPASy Swiss-Prot
Match: BRE1A_ORYSI (E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza sativa subsp. indica GN=BRE1A PE=3 SV=2) HSP 1 Score: 171.014 bits (432), Expect = 1.053e-41 Identity = 97/233 (41.63%), Postives = 138/233 (59.23%), Query Frame = 2 Query: 5 IEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAL 703 I L++ E ++ DMY +E D R++ME ++ E + LK++LDE LE RVKAANEAEA QQRL+ AEAEI E KL S +D++ L +KSK E EAY E+E IGQA+ED+Q QNQ LLQQ+ ERDD N K+ E VK KQ Q L E +L R LQQ ++L++ +I+ E+Q+K + + +V+L + +L D ++ + L +L Sbjct: 529 ISDLKQTNKELKLFADMYKRESTDSREIMESRDREFLEWAHVHALKSSLDESKLEQRVKAANEAEAITQQRLATAEAEIAESGQKLGTSRKDLVSLSHMLKSKQEECEAYRVEVECIGQAYEDIQAQNQQLLQQIIERDDDNTKIFMEGVKAKQTQDALHLETYSLRRNLQQESSLMDLYNQKIVSLEDQLKMWSDRVGKLQEDGWQQSVSLSNYQRKLVDVHRDAQKLMQSL 761
BLAST of DY260337 vs. ExPASy Swiss-Prot
Match: BRE1B_MACFA (E3 ubiquitin-protein ligase BRE1B OS=Macaca fascicularis GN=RNF40 PE=2 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 2.606e-24 Identity = 79/269 (29.37%), Postives = 135/269 (50.19%), Query Frame = 2 Query: 2 QIEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKA-------------CLTEALRYNSEDRHLAVNL-ETTKWELADAEKELKWLKSALTSS----DKEYEPIPRKTEDM 754 +++K Q+ + E +++LDMY ++ RD +++ +ER+A ++ + L++ + E R ++ A+ +R+ AE +I L KL A+++ E EA ++EM+ GQAFEDMQ QN LLQQ+ E+DD N KL+SE +K Q+ L EK L Q+ + + V++ L + EE+ +A ++AL N A L E K +L + L+ ++ L S +KE + R ED+ Sbjct: 658 ELKKAQESQKEMKLLLDMYKSAPKEQRDKVQLMAAERKAKAEVDELRSRIRELEERDRRESKKIADGDALRRIRQAEEQIEHLQRKLGATKQ--------------EEEALLSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKERALQGSLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAREKESFNLKRAQEDI 912
BLAST of DY260337 vs. ExPASy Swiss-Prot
Match: BRE1B_PONAB (E3 ubiquitin-protein ligase BRE1B OS=Pongo abelii GN=RNF40 PE=2 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 3.404e-24 Identity = 79/269 (29.37%), Postives = 135/269 (50.19%), Query Frame = 2 Query: 2 QIEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKA-------------CLTEALRYNSEDRHLAVNL-ETTKWELADAEKELKWLKSALTSS----DKEYEPIPRKTEDM 754 +++K Q+ + E +++LDMY ++ RD +++ +ER+A ++ + L++ + E R ++ A+ +R+ AE +I L KL A+++ E EA ++EM+ GQAFEDMQ QN LLQQ+ E+DD N KL+SE +K Q+ L EK L Q+ + + V++ L + EE+ +A ++AL N A L E K +L + L+ ++ L S +KE + R ED+ Sbjct: 658 ELKKAQESQKEMKLLLDMYKSAPKEQRDKVQLMAAERKAKAEVDELRSRIRELEERDRRESKKIADEDALRRIRQAEEQIEHLQRKLGATKQ--------------EEEALLSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKERALQGSLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAREKESFNLKRAQEDI 912
BLAST of DY260337 vs. ExPASy Swiss-Prot
Match: BRE1B_MOUSE (E3 ubiquitin-protein ligase BRE1B OS=Mus musculus GN=Rnf40 PE=2 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 3.404e-24 Identity = 79/269 (29.37%), Postives = 135/269 (50.19%), Query Frame = 2 Query: 2 QIEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKA-------------CLTEALRYNSEDRHLAVNL-ETTKWELADAEKELKWLKSALTSS----DKEYEPIPRKTEDM 754 +++K Q+ + E +++LDMY ++ RD +++ +ER+A ++ + L++ + E R ++ A+ +R+ AE +I L KL A+++ E EA ++EM+ GQAFEDMQ QN LLQQ+ E+DD N KL+SE +K Q+ L EK L Q+ + + V++ L + EE+ +A ++AL N A L E K +L + L+ ++ L S +KE + R ED+ Sbjct: 658 ELKKAQESQKEMKLLLDMYKSAPKEQRDKVQLMAAERKAKAEVDELRSRIRELEERDRRESKKIADEDALRRIRQAEEQIEHLQRKLGATKQ--------------EEEALLSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKERALQGSLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAREKESFNLKRAQEDI 912
BLAST of DY260337 vs. ExPASy Swiss-Prot
Match: BRE1B_HUMAN (E3 ubiquitin-protein ligase BRE1B OS=Homo sapiens GN=RNF40 PE=1 SV=3) HSP 1 Score: 112.849 bits (281), Expect = 3.404e-24 Identity = 79/269 (29.37%), Postives = 135/269 (50.19%), Query Frame = 2 Query: 2 QIEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKA-------------CLTEALRYNSEDRHLAVNL-ETTKWELADAEKELKWLKSALTSS----DKEYEPIPRKTEDM 754 +++K Q+ + E +++LDMY ++ RD +++ +ER+A ++ + L++ + E R ++ A+ +R+ AE +I L KL A+++ E EA ++EM+ GQAFEDMQ QN LLQQ+ E+DD N KL+SE +K Q+ L EK L Q+ + + V++ L + EE+ +A ++AL N A L E K +L + L+ ++ L S +KE + R ED+ Sbjct: 658 ELKKAQESQKEMKLLLDMYKSAPKEQRDKVQLMAAERKAKAEVDELRSRIRELEERDRRESKKIADEDALRRIRQAEEQIEHLQRKLGATKQ--------------EEEALLSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKERALQGSLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAREKESFNLKRAQEDI 912 The following BLAST results are available for this feature:
BLAST of DY260337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY260337 ID=DY260337; Name=DY260337; organism=Citrus clementina; type=EST; length=1070bpback to top |